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Detailed information on CNT30243750


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C1M0|ATPG_MAIZE, E-value = 1e-119

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520196Avena sativaSetaria italica58.1263.5389.79519forward
CNT30221396Avena sativaHordeum vulgare54.8741.3993.27490forward
CNT30554409Avena sativaOryza glaberrima35.9522.8690.34321forward
CNT30453817Avena sativaSaccharum spontaneum58.0149.0188.42518forward
CNT3012827Avena sativaZea mays39.6421.9390.68354forward
CNT30720686Avena sativaTriticum spelta54.4264.0394.65486forward
CNT30596670Avena sativaOryza meridionalis37.6355.4590.77336forward
CNT30577183Avena sativaOryza barthii37.6331.3790.77336forward
CNT30117211Avena sativaOryza nivara37.6328.4790.77336forward

Expression of CNT30243750

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MERFFRRSMALSVALLMALILAASSLASDSWRARRIWLLR*

>peptide 2 (33 aa)
CGRGRQGCNCKQILWIIHFASLNWNLVYLATGD*

>peptide 3 (31 aa)
MPLTSQISPLGDMGSSVWMIGSERTRLTNLE*

>peptide 4 (50 aa)
MRIITDTDQQEERRKRGKELYIRAAAQLMSRGGISRKGRRRRQRSRGSLR*

Sequence

>CNT30243750
TTGCGGAAGAGGGAGGCAAGGTTGCAACTGTAAACAAATACTCTGGATTATACATTTCGCATCTCTGAACTGGAATCTTGTGTATCTCGCGACGGGCGAT
TGAGTACAGACACATCATTTTTGTGCTATGAGAATTATTACAGACACAGACCAACAAGAGGAGAGGAGAAAAAGAGGCAAAGAATTATATATAAGAGCGG
CAGCTCAGCTCATGTCGCGAGGAGGAATCAGCCGGAAAGGGCGTCGGCGCCGGCAACGATCTCGAGGATCTCTCCGGTGATCTTGGCCTGGCGCCGGCGA
TTGTAGACCATGGAAAGATTTTTCCGTAGATCAATGGCGTTGTCCGTGGCACTGCTCATGGCGCTCATCCTGGCGGCGAGCTCGCTGGCGAGCGACTCCT
GGAGGGCACGCAGGATCTGGCTGTTGAGGTAGAGCGGGAGGAGCGCGTCGAGGATCTGGACGGGGTCCTGCTCGAACTGGACGACGGGGGAGAAGGGCTG
CATCTCGATCTTGATCTTCTCGCGCTCGACGGTGAGCTTGCCTTCCTTGGTGGTGAGCTTGAAGAGCTCGTCCTCGCTGGCGTCGACGCAGATGCCGTTG
ACGTCGCAGATCTCTCCCTTGGGGGACATGGGCAGCAGCGTCTGGATGATTGGGTCGGAGCGGACGAGGTTGACGAACTTGGAGTAGACGAGCTCCACCT
TGTCCACCTCCTCGGCGACGAAGAGGGAGTAGATGAGGTCGCAGATGGCCTGCGAGAAGCGCTCGGTGGGGATGTACTCGCGGCGCTGGAAGTAGGCGTT
GCCCTTCTTGCCGACGCTGATGACCTTGTAGTCGACGCCGAGCTGCCTGAGGTCCTCCATGCGGGCCTCGGCCTTCTTGAGCACGTTGTTGTT