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Detailed information on CNT30243125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SH66|DIR5_ARATH, E-value = 6e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694742Avena sativaOryza sativa32.1831.5483.23334forward
CNT30308915Avena sativaTriticum aestivum43.3591.0987.78450forward
CNT30386863Avena sativaTriticum turgidum27.0731.584.34281forward
CNT30102405Avena sativaOryza rufipogon32.1848.9783.23334forward
CNT30577067Avena sativaOryza barthii47.1152.8180.98489forward
CNT30551414Avena sativaOryza brachyantha6.842588.7371reverse complement

Expression of CNT30243125

Peptides detected in this lncRNA

>peptide 1 (36 aa)
DTNITDGNFSFFLKEHKHFSYYNSIYVTLMELTLKN*

>peptide 2 (55 aa)
MPRAMKKSPVPPTTEMSRVLALMMSAPMRLSVPLCTVELNTMEKPNQAFCSSCLS*

>peptide 3 (40 aa)
MPSRNTTTMAARNSLEGAARPGIVVVDATLLPIESKLLDL*

>peptide 4 (39 aa)
MQLYITYYLSTCVIMTHNTTRTYICACMHINLSSHTKIN*

Sequence

>CNT30243125
GGATACAAACATAACCGACGGCAATTTTTCATTTTTTTTGAAAGAACATAAACATTTTTCGTACTACAATAGTATATATGTAACACTTATGGAATTAACA
CTTAAAAACTGAGTCACAATAAACATGATCTAAATGCAGTTGTATATCACATACTACTTATCGACGTGTGTGATAATGACACACAACACAACCCGGACAT
ATATATGCGCATGCATGCATATTAACCTGTCATCACACACCAAAATAAATTGAAAAGCATAAACAACAGCAGCCCATCGGCCATCACACACAAGGATACA
TCGAAAAGCATAAACAACAGCAGCACACATATCGGCATGCTGTATCATCAGACGTAGCACTCGTAGAGCTTGATGTCCATCCGGAGGCGGAAGTAGTACA
ACCCCTCCAAGGCGTCGGTGCTGAGCGTGGCGATGCCGCGCGCCATGAAGAAGTCGCCGGTGCCGCCGACCACGGAGATGTCCCGAGTCTTGGCGCTCAT
GATGTCGGCGCCCATGAGGTTGAGCGTGCCCTTGTGCACGGTGGAGTTGAACACGATGGAGAAGCCAAACCAGGCGTTCTGCTCCTCCTGCTTGTCGTAG
AAGTAGAACCCCTGCGCGTGCGCCGCGGGCTCCTTCCCGGCCAGGGGCATCGCCTTCCCCACCGTCATCGGGTCGTTGAACACCGCGAGCATGCCGAAGT
AGGTGGTGTTCTTGCTGCGGCTCGTGCTCAGCGCCGTCGGCTTGGTGACCCCCGACGACGTCGCGTTCGCCGTGTTGTTGCCGCCGTCGTAGAGGATGTC
GTGGTAGTAGAGCGTCATCTGCTTGCACGGCTCGTTGGAGCTGCTGGAGACGACCCTCTCCAGGCCGTGGGCGGAGCCCGCCAGCATGCCGAGCAGAAAC
ACCACGACCATGGCGGCCAGAAACAGCTTGGAAGGTGCTGCGAGGCCTGGCATTGTTGTTGTGGATGCAACTCTCTTGCCGATCGAGTCCAAGCTGCTAG
ATTTGTAGATAGCTGTGTAGAGGACTGTTCAGCTCGTG