Detailed information on CNT30242614


BLAST search results

BLAST vs Swiss-Prot:
sp|P36886|PSAK_HORVU, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Avena sativaOryza sativa28.2915.5994.06101forward
CNT30671922Avena sativaSetaria viridis27.1726.8795.8897forward
CNT30520562Avena sativaSetaria italica39.7831.795.77142forward
CNT30289849Avena sativaTriticum aestivum51.2644.8590.71183forward
CNT30436322Avena sativaAegilops tauschii49.0241.3790.86175forward
CNT30659915Avena sativaTriticum dicoccoides51.5450.6990.76184forward
CNT3059741Avena sativaArabidopsis lyrata35.8540.1382.03128forward
CNT30611008Avena sativaArabis alpina39.2252.8380.71140forward
CNT30325346Avena sativaAsparagus officinalis33.8925.4785.12121forward
CNT30102407Avena sativaOryza rufipogon40.942.0793.84146forward
CNT30581501Avena sativaEchinochloa crusgalli48.7439.1993.68174forward
CNT30118070Avena sativaOryza nivara28.2918.0794.06101forward

Expression of CNT30242614

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FFEVNLFMAPSHLNLKRGSSSCYVPLKQHALHT*

>peptide 2 (55 aa)
MIWSRTPASVSASVNPAGSPVCSPDSRASSFSPAVAFRFADGASPNRPANSISVVV

>peptide 3 (55 aa)
MHYTHSTLYITSSNYSTVGAGALIDPLHRSPLADDLVEDAGERVGEREPGRVAGL*

Sequence

>CNT30242614
ATTTCTTCGAGGTAAATTTATTTATGGCACCTTCTCATCTAAACCTGAAGCGAGGAAGCTCTAGCTGTTACGTTCCATTGAAACAACATGCATTACACAC
ATAGTACATTGTACATCACATCATCAAATTACAGCACCGTAGGCGCCGGAGCATTAATCGATCCGTTACATCGATCGCCTCTAGCCGATGATCTGGTCGA
GGACGCCGGCGAGCGTGTCGGCGAGCGTGAACCCGGCCGGGTCGCCGGTCTGTAGCCCGGACTCGCGGGCCTCCAGCTTCAGCCCCGCCGTCGCCTTCCG
GTTCGCCGACGGCGCCAGCCCGAACCGCCCGGCGAACAGCATCAGCGTCGTCGTCGT