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Detailed information on CNT30240485


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178026Avena sativaSecale cereale84.4144.6293.57249forward
CNT30655703Avena sativaTriticum dicoccoides84.7569.6493.2250forward
CNT30131491Avena sativaLolium perenne84.4150.5196.39249forward
CNT30679155Avena sativaTriticum urartu84.7574.8593.2250forward
CNT30149479Avena sativaBrachypodium distachyon77.6359.4893.01229forward
CNT30576447Avena sativaOryza barthii28.1427.6790.3683forward

Expression of CNT30240485

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GIGSMVQEGRKGLNRLRSCRVGPGWAAAGAPS*

>peptide 2 (64 aa)
MGSRNLSRRPRLVKGAAKVLKNLLCRPLYGDGASEPYRSHCPVVLPMSSRSKYTLFSPYLATTAA

>peptide 3 (35 aa)
MATARRSRTGPTAPSCCRCPPGRSTRSSPRTWPPPP

Sequence

>CNT30240485
TCGGCATCGGATCCATGGTACAAGAAGGCAGGAAAGGATTGAACAGGCTTAGATCTTGCCGCGTGGGCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTG
ATGGGGAGCAGGAACTTGAGCAGGAGGCCCCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTATGGCGACGGCGCGT
CGGAGCCGTACAGGTCCCACTGCCCCGTCGTGTTGCCGATGTCCTCCAGGTCGAAGTACACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCG