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Detailed information on CNT3024028


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 9e-145

BLAST vs NONCODE:
NONSLYT002586, E-value = 3e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Populus trichocarpaSetaria viridis21.1120.9783.97156forward
CNT30640134Populus trichocarpaNymphaea colorata38.0240.8485.41281forward
CNT30547471Populus trichocarpaIpomoea triloba30.4541.5983.56225forward
CNT30513072Populus trichocarpaJuglans regia43.377.2986.88320forward
CNT30371838Populus trichocarpaArabidopsis thaliana44.7925.0984.29331forward
CNT3019595Populus trichocarpaCitrullus lanatus49.9366.4982.93369forward
CNT30728649Populus trichocarpaCorchorus capsularis31.9421.6787.29236forward
CNT30405829Populus trichocarpaBeta vulgaris34.6430.9985.55256forward
CNT30636551Populus trichocarpaCapsicum annuum23.8226.6784.66176forward
CNT30192963Populus trichocarpaSecale cereale35.1848.6985.77260forward
CNT30224330Populus trichocarpaHordeum vulgare45.7469.9886.09338forward
CNT30391299Populus trichocarpaTriticum turgidum24.7633.2786.34183forward
CNT30561656Populus trichocarpaActinidia chinensis25.8513.6487.43191forward
CNT30510528Populus trichocarpaSolanum lycopersicum44.3825.4785.67328forward
CNT30143750Populus trichocarpaMedicago truncatula42.941.3885.17317forward
CNT30441049Populus trichocarpaAegilops tauschii25.4449.7487.23188forward
CNT30665536Populus trichocarpaTriticum dicoccoides46.1451.7585.92341forward
CNT30309902Populus trichocarpaCamelina sativa47.7731.1382.72353forward
CNT30263667Populus trichocarpaBrassica rapa47.7749.9383.29353forward
CNT30612239Populus trichocarpaArabis alpina51.9614.6283.33384forward
CNT30445994Populus trichocarpaSaccharum spontaneum35.4518.485.88262forward
CNT3015244Populus trichocarpaZea mays14.2137.7784.76105forward
CNT30210789Populus trichocarpaHelianthus annuus29.0959.3982.33215forward
CNT30716450Populus trichocarpaMalus domestica golden47.3660.4586.57350forward
CNT30479087Populus trichocarpaArabidopsis halleri15.2938.8388.5113forward
CNT30361828Populus trichocarpaSorghum bicolor30.9944.2185.15229forward
CNT30370118Populus trichocarpaOryza glumipatula29.0934.7986.51215forward
CNT30705326Populus trichocarpaPrunus avium53.4530.7484.05395forward
CNT30119815Populus trichocarpaCitrus clementina28.1545.3285.1208forward
CNT30575986Populus trichocarpaOryza barthii29.0918.286.51215forward
CNT30557952Populus trichocarpaPanicum hallii46.4142.0982.51343forward

Expression of CNT3024028

Peptides detected in this lncRNA

>peptide 1 (63 aa)
FMISAPPIKSSCKSFKQISRCSSPAPAMICSPDSSMLQTTMGSDFAKRFRPSTSLGRSDATLH*

>peptide 2 (90 aa)
LYDFCPTHKIILQILQTDLKVQLSSSSNDMLSRFLNATDNHGIRLRQTLQTFHQLGEVRCYLALNSHTHNRRDRELHSTNRMGIDFLFIS*

>peptide 3 (33 aa)
MILTFRPVVTFPAKTRPKAKNLPLSEAGIILDT*

Sequence

>CNT3024028
CTTTATGATTTCTGCCCCACCCATAAAATCATCCTGCAAATCCTTCAAACAGATCTCAAGGTGCAGCTCTCCAGCTCCAGCAATGATATGCTCTCCAGAT
TCCTCAATGCTACAGACAACCATGGGATCAGACTTCGCCAAACGCTTCAGACCTTCCACCAGCTTGGGGAGGTCAGATGCTACCTTGCACTGAACAGCCA
CACGCACAACAGGCGAGACAGAGAACTTCATAGCACGAATAGGATGGGCATCGACTTCCTTTTCATTAGTTAAAGTGGCATTCTTAGTGATGAACTGATC
CAGTCCAACCAAGGCAACAGTGTTACCACAAGGCACATAGTTTGGTCCCATGATCCTAACCTTCAGACCAGTTGTTACCTTTCCAGCGAAAACACGCCCA
AAGGCAAAGAACCTACCCTTGTCAGAAGCAGGAATCATCTTAGACACGTAGAGCATGAGGGGGCCATTAGGGTCACAATTCCTGATAGCATTGGCATAAG
CATCATCAAGGGGACCCTCATACAAGTTCTCCACACGGTATCTCTGAGCCGTTGCAGGAGAGGGCAGGTGAAAGATCATCATTTCAAGCAGAGCAGTGCT
TGCTGGCAGCCAGGTCTGCATCACACGCTTCATCAGAGGCTTTCCCATCAAGTCCTTCTCATCAGACTTCATGACAACACCAAGCTTTTGCAACATGGGC
CACAATTTATCCTTCTGATCATTCATGCACGTTTTAATA