CANTATAdb - search

Detailed information on CNT30239963

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30226106	Avena sativa	Hordeum vulgare	33.83	33.63	89.52	229	forward
CNT30130807	Avena sativa	Lolium perenne	49.63	40.38	89.58	336	forward
CNT303472	Avena sativa	Zea mays	14.48	34.39	85.71	98	forward
CNT30688653	Avena sativa	Triticum urartu	33.83	50.11	90.39	229	forward

Expression of CNT30239963

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKPAYSFFTRTSGALLLHYMRGNRVQVTR*

>peptide 2 (74 aa)
DELIFPVVVQFVLLVACRCYHPIDETCLQFFYENIRSSAFALYEREQSPSYKIVTKKWHERPLFKDTTCEHAVV*

>peptide 3 (84 aa)
MPFILYIITYYLPMDAIRRESSVVVILPELRLEPMYEIHFHLKRCRKNIIRNRWLRSKHRIGNRNNPWVLAAERGQRGCWLVMC*

Sequence

>CNT30239963
AGACGAGCTAATATTTCCGGTGGTTGTCCAATTTGTTTTGTTAGTTGCATGTCGATGTTACCATCCTATTGATGAAACCTGCTTACAGTTTTTTTACGAG
AACATCAGGAGCTCTGCTTTTGCATTATATGAGAGGGAACAGAGTCCAAGTTACAAGATAGTTACAAAGAAATGGCACGAGAGACCTCTTTTTAAAGACA
CAACATGCGAACACGCAGTGGTTTAGCCACCTGGTATCATCTAGTTTGTTAAAGAGTGAAATACAAACATCACCAACATAATATGTATGTCACGAATTTG
AGAAAAACATATATTTCCATGATTCAAAAGGTACAAAGAACTCTCACAACTCTCAAGCATGCATAAGTATCACTTACATGCCATTTATTTTATATATTAT
TACATATTATCTTCCCATGGATGCAATTAGGAGAGAATCATCAGTAGTTGTTATTCTCCCAGAACTGAGACTGGAGCCAATGTATGAGATCCATTTCCAC
CTGAAACGCTGTCGCAAGAACATCATCCGAAATCGGTGGCTTCGATCCAAACACCGCATTGGCAATAGAAATAACCCCTGGGTTTTGGCTGCTGAGCGAG
GACAACGCGGCTGCTGGCTTGTCATGTGCTAGGTTCATTTGGAAGTGGATCATGGCCTTTGGGAAGACGAACACGTC