« Back to Avena sativa search


Detailed information on CNT30239672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Avena sativaOryza sativa43.4832.9985.8317forward
CNT30677535Avena sativaSetaria viridis23.8783.2584.48174forward
CNT30283765Avena sativaTriticum aestivum58.7195.7584.58428forward
CNT30384857Avena sativaTriticum turgidum29.951.4287.16218forward
CNT30435311Avena sativaAegilops tauschii59.8163.5684.17436forward
CNT30679142Avena sativaTriticum urartu57.6141.1884.76420forward
CNT30361318Avena sativaSorghum bicolor27.4333.1183200forward
CNT30596968Avena sativaOryza meridionalis38.4161.8186.07280forward
CNT30149646Avena sativaBrachypodium distachyon43.3558.8587.66316forward
CNT30103572Avena sativaOryza rufipogon38.4126.2986.43280forward
CNT30577940Avena sativaOryza barthii43.4839.1485.8317forward
CNT30498664Avena sativaDigitaria exilis29.928.5783.03218forward

Expression of CNT30239672

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGFIIWSSIWYIIGRSSIRKIVGWSSIWCIVGRSSIWCIIGRSSI*

>peptide 2 (37 aa)
MVTIGTMGHVISTRTGRQGHFPSRQTSRCCISVERSR*

>peptide 3 (76 aa)
MVYHWQIFHKEDRWLVFHMVYRWQVFHMVYHWPVFHIVDRWLVSHMVDHWQVFHIVNHWQVFHMVDQWQVFDMVNH*

Sequence

>CNT30239672
CCCAGTTCTCGAGAAGCCTAATTGCTGTATACCCCTACTAGAGTAGCTATCAGTAGGCATATGGTCACGATAGGAACGATGGGACATGTAATCAGCACCA
GGACTGGCAGGCAGGGGCATTTCCCTAGTAGGCAAACGAGCAGGTGCTGCATATCTGTCGAACGAAGCAGATGATGGAGCGTTGCTAGCAAAAGGACCTC
CACTAGGACACTCTCTTCTTTTAGAGAAGTAATCTACAGGATAAACAGAAGAAGGATCATGGGGTTTATTATTTGGTCTTCCATATGGTATATCATTGGC
AGATCTTCCATAAGGAAGATCGTTGGTTGGTCTTCCATATGGTGTATCGTTGGCAGGTCTTCCATATGGTGTATCATTGGCCGGTCTTCCATATAGTGGA
TCGTTGGCTGGTCTCCCATATGGTGGATCATTGGCAGGTCTTCCATATAGTGAATCACTGGCAGGTCTTCCATATGGTGGATCAATGGCAGGTTTTCGAT
ATGGTGAATCATTAGCAGACCTTCCATAAGGGGGATTGGCAGGTCTTCCATATAGTGTGAATTCCCTGCTAGGAAATATATCAGCAGGAGGACCATCAAA
AGTAGCAAAAGGTAGCAGATTATTGGCAGAACTTTCATCTCTGAGGGTCCTAGTTCTAAGTCTTGCAGCAATCTCTGTGAGGGCTTCTCTTGAAGTATCT
GGAGGTCCAGCGACCTGAAAGCTCGGAAC