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Detailed information on CNT30239033


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Brassica oleraceaSetaria viridis65.6865.1195.07892forward
CNT30519050Brassica oleraceaJuglans regia79.3895.8296.571078forward
CNT30373968Brassica oleraceaArabidopsis thaliana51.4745.2799.43699forward
CNT30619379Brassica oleraceaSesamum indicum57.4410095.51780forward
CNT30200729Brassica oleraceaPisum sativum79.0944.1696.931074forward
CNT3048154Brassica oleraceaPrunus dulcis76.9599.6296.751045forward
CNT30285964Brassica oleraceaTriticum aestivum60.970.8795.65827forward
CNT30224448Brassica oleraceaHordeum vulgare58.32100.1394.32792forward
CNT30544510Brassica oleraceaBrassica napus100.5285.3197.81365forward
CNT30444212Brassica oleraceaAegilops tauschii66.1369.0295.32898forward
CNT30261854Brassica oleraceaBrassica rapa64.5182.1899.89876forward
CNT30206557Brassica oleraceaHelianthus annuus60.3838.0296.83820forward
CNT30365697Brassica oleraceaSorghum bicolor65.9898.6893.86896forward
CNT30413997Brassica oleraceaPapaver somniferum61.4910095.45835forward
CNT3036408Brassica oleraceaCucumis melo77.8410097.161057forward
CNT3049312Brassica oleraceaCucumis sativus45.2178.4297.23614forward

Expression of CNT30239033

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFQRSRVVLFPGYDNDPSAGSPTETLLRLLLPLNDKV*

>peptide 2 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 3 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 4 (43 aa)
MIRFSGLLATSQTANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 5 (45 aa)
VVLDFTLQHCFRTNTVSGLAKAGCLVECSLTLFVPGFGDIRKLCV*

Sequence

>CNT30239033
AGTCGTTTTAGACTTTACATTGCAGCACTGCTTCCGAACAAACACCGTCTCCGGGTTGGCGAAAGCAGGCTGTTTAGTTGAATGTTCCTTGACACTTTTC
GTGCCGGGGTTTGGTGATATCCGGAAGCTATGCGTATGATCCAACCGAAACTGGGCCGGTGACGAACGCATAACCACGGAATCGGTAGGCACGAAATCAG
CTAAGATACCGGCCCACCGAGAGTGATGTTTCAACGTTCTCGGGTCGTTCTGTTTCCAGGTTACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACC
TTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTCGCAGACGGCGAACCACCCACGTCGCCGCGATCCGAACACTTCA
CCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCAGTGT
AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCG
TGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAC
CACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCC
TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCC
TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCA
GAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTA
GTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACA
AGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCATAAATCACGGCAAGCCCTG