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Detailed information on CNT30236790


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SAJ4|PGKY3_ARATH, E-value = 9e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693645Brassica oleraceaOryza sativa36.7525.6283.65104forward
CNT30671212Brassica oleraceaSetaria viridis50.5319.7581.12143forward
CNT30371825Brassica oleraceaArabidopsis thaliana43.1128.586.07122forward
CNT30176931Brassica oleraceaSecale cereale42.7625.5380.99121forward
CNT30596272Brassica oleraceaOryza meridionalis36.7545.2283.65104forward
CNT30358992Brassica oleraceaLactuca sativa52.332.183.78148forward
CNT30116795Brassica oleraceaOryza nivara36.7548.8383.65104forward
CNT30557143Brassica oleraceaPanicum hallii35.6913.5483.17101forward

Expression of CNT30236790

Peptides detected in this lncRNA

>peptide 1 (49 aa)
GSMSSMSSSESIVDIEISKGSKLLCEFRVILFFFLVEPHVLQEKNTSFR*

Sequence

>CNT30236790
GGAAGCATGAGCTCTATGAGCAGTTCCGAAAGCATCGTTGACATAGAGATCAGCAAGGGCAGCAAGCTTCTTTGCGAATTCAGGGTCATTCTTTTCTTCT
TCCTTGTAGAACCTCACGTTCTCCAAGAGAAGAACACCTCCTTCAGGTAGTGCTGCAACTAGTTTCTGGACTTCCTCACCAATAGAGTCATTTGCCATTA
CAACCTCAATCCCAAGAAGCTCAGACAACCTCGGCACAAGAGGCTTTAAGCTGAACTTAGGGGTAACACCTTTTGGGCGACCC