CANTATAdb - search

Detailed information on CNT30226414

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30170363	Hordeum vulgare	Pistacia vera	4.12	21.15	89.83	59	reverse complement
CNT30176977	Hordeum vulgare	Secale cereale	8.3	29.02	96.64	119	forward
CNT30679389	Hordeum vulgare	Triticum urartu	13.96	21.19	96.5	200	forward

Expression of CNT30226414

Peptides detected in this lncRNA

>peptide 1 (46 aa)
HRKSKIFYRIRFGNMECQRNSNYVRLRKKSCVESRESLFFFGQMYE*

Sequence

>CNT30226414
TCATAGAAAAAGTAAAATATTTTATAGGATCCGTTTCGGAAACATGGAATGTCAGAGAAATTCTAATTATGTGAGGCTTAGAAAGAAGTCCTGCGTAGAG
TCCAGGGAGAGCCTATTTTTCTTTGGTCAGATGTATGAGTGAAACTAGCCCTCGCCATCATCATCGATGATGAAAAAACGAGGTAATTCCCCATTACGTA
CTCTCTTTTCTGTCTTGACCCACTCAACCACGCGAAAGTAGTACCGAGAGCTGTGCCCATGTCGGACGAGGCCTTGCTCCACAAGCCATAACTTATCAGG
GTCGTGGAGGTCCGAATCTTTGTGGAGGAGAGTCGAGGCCACGAGATCCGTGGTGCTTTCGTCCGCAAAGTGGTAGCTCAAGACCGCGGTAGCATCGAGG
TCTCTTAAAAAAGCGCCGATGCGTTGGTGGTAATTAAGGACTAGGGCTAGCCGTTCTTCCTCCCCCATTGTAAGCGGTCGTCCTTCGGGCAGATTTACAG
GAGCCTGACCTCCCTGCGGGAGATACGGGGCCACGGCGCGGGACAGGTCGTCATCGCCCATCATATTCATACCACCTCCTAACATCATCATATTCATATC
ACCTAACATAGAAACACTCGCTTTCCCATATGAGCAAGCGAATCCGAGTCCTTCCGTCGACTCGAAAGGATCGAACAAGTTCCAGAGAAGAAGAATTAAT
CTGAGCGTTATCAAGGAGAACCATAGCCAGAATATCATTTTATTTATTTGGAATGGAAAAATAAAGCGCACCCAAATAAATATTTGGGTTAAAAACAAAG
TCACTCTTCTATCCTTCATATCCGTAGAAAAAAATCTCATATGTAAACCCCCCTTCACCCCCATCCCCTAAAGTGGTAAAGAAGGAGGCTCTTTTTTGTC
TCATTAGGACANAATAAATATTTGGGTTAAAAACAAAGTCACTCTTCTATCCTTCATATCCGTAGAAAAAAATCTCATATGTAAACCCCCCTTCACCCCC
ATCCCCTAAAGTGGTAAAGAAGGAGGCTCTTTTTTGTCTCATTAGGACAAACAAATAGGAAGGGATAGTTCTTTCATTGCATTGATAGAAGTCAAACTTC
TATCAAAAGATCTCTCTATTATTTAGAGAAAAGAGTTGGCGTGGGTTCTACCAACGAAACGAATCAGTTTTGGATTGAAAAACACAACATTGCACAATGA
TCCGATTCCAGCCTATCAAAAGCCAATTTCTTTATTTAGAACTTCAATCCTCACTAGAGCACTGAACATTTGTTTAATCTCCTAAAGTGGTGTTGCTACC
TCAATCTGTCCATGCGTGGATTCGCTGGCTCTGTTTGAAGCTTCGAACCTGTATTGAGCTTTCTTCCTTCGTATCGTATTTCAGCGGATCGGGTAGTTCC
GGTTGCAGTCCCAGGGCTTTCAATTACTACTAT