Detailed information on CNT30226219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693801Hordeum vulgareOryza sativa46.1538.7197.22108forward
CNT30674495Hordeum vulgareSetaria viridis41.8825.8698.9898forward
CNT30523132Hordeum vulgareSetaria italica41.8816.4298.9898forward
CNT30186107Hordeum vulgareSecale cereale50.4327.57100118forward
CNT30231835Hordeum vulgareAnanas comosus41.0314.7797.9296forward
CNT30108786Hordeum vulgareOryza longistaminata41.032.8497.9296forward
CNT30102870Hordeum vulgareOryza rufipogon34.6219.7610081forward

Expression of CNT30226219

Peptides detected in this lncRNA

>peptide 1 (76 aa)
CSPQNHHKLQDHVRTANCYTEPTIDREQPSLGGGELGDGLGALGDGVLGELAGEDEADGGLDLPGRDGELGDGLGAL

>peptide 2 (29 aa)
VFSTEPPQVTRPRPNSQLLHRTNDRQGTA*

Sequence

>CNT30226219
GTGTTCTCCACAGAACCACCACAAGTTACAAGACCACGTCCGAACAGCCAACTGTTACACAGAACCAACGATAGACAGGGAACAGCCTAGCCTAGGAGGA
GGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGACGTG
ATGGTGAACTTGGTGACGGCCTTGGTGCCCTCGG