Detailed information on CNT30225775


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 1e-165

BLAST vs NONCODE:
NONBNAT007398, E-value = 7e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562273Hordeum vulgareActinidia chinensis73.9662.7682.8622forward

Expression of CNT30225775

Peptides detected in this lncRNA

>peptide 1 (88 aa)
KMVRRMQGATWKWTNQTIILHKTLVIYIMVVQLRPQENTPHGEHSPKTPYLPGTKLVAKAHALLLTGSAMWSARLSSGPFPVTIAWTK*

>peptide 2 (38 aa)
MPQGLQPGQEGRSCHLGRVGRRSHRVGRLQCGTPRRHP*

>peptide 3 (32 aa)
MEVDKSNHYFAQNSRNLHHGSTTQTTRKHASW*

>peptide 4 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 5 (31 aa)
MRYPSTAPMSTTWHAQIARILCAWTRLGLPR*

>peptide 6 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

Sequence

>CNT30225775
ATAAAATGGTCAGACGGATGCAAGGCGCGACATGGAAGTGGACAAATCAAACCATTATTTTGCACAAAACTCTCGTAATTTACATCATGGTAGTACAACT
CAGACCACAAGAAAACACGCCTCATGGTGAGCACAGTCCCAAGACACCTTACTTGCCGGGGACAAAGTTGGTGGCGAAGGCCCATGCATTGTTGTTGACG
GGGTCGGCGATGTGGTCAGCGAGGTTGTCGAGTGGGCCCTTTCCAGTGACGATAGCTTGGACAAAGTAGCCAAACATTGAGAACATGGCGAGGCGACCAT
TCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTTCAGCCAGGCCAAGAGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACGATCTC
ACCGAGTGGGCCGCCTGCAATGCGGTACCCCTCGACGGCACCCATGAGCACCACCTGGCATGCCCAAATAGCTAGGATACTTTGTGCGTGGACGAGGCTT
GGGTTGCCAAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAACCGGCCTTGAACCAAACAGCCTCACCGAACTTGACGCCGTTGCGAGCGAGCAACT
CAGGAAAGACACAACCAAGTGCTCCGAGCATGGCCCATCGACAATGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCAGGGTCAGCTGAAAGTCC
GGCAGTGTCCCACCCATAGTCGCCTGGGAACTCACCGGTGAGGTAGCTCGGGGGCTCACCAGAGAGTGGGCCGAGGTAGAGCACACGGTCGGCACCGTAC
CATGGGCTGCCAGAGGAAACCTGTTTCGCCTTTGCTGCAGT