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Detailed information on CNT3022572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381485Populus trichocarpaManihot esculenta43.7926.786.54208forward
CNT30118924Populus trichocarpaCitrus clementina40.2134.4882.72191forward

Expression of CNT3022572

Peptides detected in this lncRNA

>peptide 1 (43 aa)
NGRVPSRESQFTHKKVKFTLGGSIHRKLRKISSYSIRRSMKCH*

Sequence

>CNT3022572
AATGGACGTGTTCCTTCAAGGGAATCACAGTTCACTCATAAAAAAGTGAAGTTTACACTTGGGGGCAGCATTCACAGAAAGTTGAGGAAGATTTCCTCTT
ATTCAATTCGGAGGTCAATGAAGTGTCATTAAGCTATTTTATGTTGGAACTTACTTCTGGCTTTGTTTGGCTCGAATCTTTTGTTCCAAAACAGCCACTT
CTGTCTCGAGGCTGAACATTCTGTTAAGAGCATGCATATTCTCAAGGGTCTCGCTGAGAGTCCGGCTTCAAATTGTTTTGATTCTTCATTAATGATTGCC
TGAGCTTCCATTGCTTTTCGCAGGCGGTCTTCTTTGTTAGCAGCCACAACCTCCTTCAGGTCATCAACATTGTAAACTCGCACATTTTCAAGGTCGCTGA
CACATGAACCCACATTTCTGGGAACAGAGATATCAACAAATAGCCTCGAACCCCCAACTTCTGAACCAACAGGAG