Detailed information on CNT30225098


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Hordeum vulgareOryza sativa24.4618.4391.1868forward
CNT30396861Hordeum vulgareTriticum turgidum53.620.4794.63149forward
CNT30253461Hordeum vulgareAvena sativa46.7615.1591.54130forward
CNT30667276Hordeum vulgareTriticum dicoccoides53.627.9594.63149forward
CNT30460356Hordeum vulgareSaccharum spontaneum34.5320.0486.4696forward
CNT30143360Hordeum vulgareLolium perenne39.2112.3489.91109forward
CNT3066989Hordeum vulgareLeersia perrieri28.787.7886.2580forward
CNT30686240Hordeum vulgareTriticum urartu66.9140.4394.09186forward
CNT30722257Hordeum vulgareTriticum spelta66.915094.09186forward
CNT30106373Hordeum vulgareOryza longistaminata24.465.891.1868forward
CNT30149601Hordeum vulgareBrachypodium distachyon47.1214.690.84131forward
CNT30584129Hordeum vulgareEchinochloa crusgalli34.1722.284.2195forward
CNT30603733Hordeum vulgareOryza punctata30.9416.2388.3786forward
CNT30556342Hordeum vulgarePanicum hallii34.536.187.596forward

Expression of CNT30225098

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLFLLLRLLLQHPGLPLLRLMLLLLLPFPGFRRK

>peptide 2 (41 aa)
MEPPPAQSMSATDDLHDKSLDGCCSCCYDCCSSILDFLCCA*

Sequence

>CNT30225098
GGCGCACAAATAATCGGACGACAAGCCAGGTCGTACACGGACATGCCATACCTTAAGCCTTAAATCCCGGCAGAAGAACTTTACACCGGTGCGGATAGAC
CGACTCGGCGATGGAGCCCCCGCCTGCTCAGTCCATGTCTGCGACCGACGACCTCCACGACAAGAGCCTCGACGGATGCTGTTCTTGCTGCTACGACTGC
TGCTCCAGCATCCTGGACTTCCTTTGCTGCGCTTGATGCTGCTCCTCCTCCTGCCGTTCCCTGGCTTCCGGCGGAAGC