Detailed information on CNT30224849


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188323Hordeum vulgareSecale cereale103.7961.185.81465forward
CNT30394125Hordeum vulgareTriticum turgidum99.3389.7286.97445forward
CNT30247639Hordeum vulgareAvena sativa39.7333.9789.33178forward
CNT30722036Hordeum vulgareTriticum spelta89.9693.7287.84403forward

Expression of CNT30224849

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSCCFDIGDANPCNKMIICLSSKLDIRLKKYYRLFLICCPVCFLFSCMHLNVFVLVEWYF

>peptide 2 (42 aa)
PPGLGFLSELYKYHARAVPFYLRRRSKQIPRPSPPAAPPPPR*

Sequence

>CNT30224849
CCCTCCTGGGTTAGGGTTCCTTTCCGAGCTCTATAAGTACCACGCGAGAGCAGTCCCCTTTTACCTCCGCCGCCGCAGCAAGCAGATACCGAGACCCAGT
CCGCCTGCCGCGCCGCCGCCTCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGTTCCAA
GTAGGCGAACAAAGAGGAGATAACCTTGTATCAATGCACCAGTCTGTTGGGTCGTTTGGTTCCTGATATGTCTTGTTGTTTTGATATTGGGGATGCCAAC
CCTTGTAACAAGATGATTATATGCTTATCTTCAAAGCTGGATATTCGGCTTAAGAAATATTATCGGCTATTTTTGATTTGTTGCCCTGTCTGTTTCTTAT
TTTCTTGCATGCATCTGAATGTTTTTGTCTTAGTCGAATGGTATTTCA