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Detailed information on CNT3022469


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678389Populus trichocarpaSetaria viridis33.8519.5781.82110forward
CNT30567387Populus trichocarpaActinidia chinensis45.8515.5784.56149forward
CNT30172717Populus trichocarpaTrifolium pratense44.9210.3382.88146forward
CNT30146035Populus trichocarpaMedicago truncatula44.9259.1181.51146forward

Expression of CNT3022469

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VNEVSLSYFMLELTSGFVWLESFVPKQPLLSRG*

Sequence

>CNT3022469
GGTCAATGAAGTGTCATTAAGCTATTTTATGTTGGAACTTACTTCTGGCTTTGTTTGGCTCGAATCTTTTGTTCCAAAACAGCCACTTCTGTCTCGAGGC
TGAACATTCTGTTAAGAGCATGCATATTCTCAAGGGTCTCGCTGAGAGTCCGGCTGTCACTACCATCACATCTCAGCATAAGCCCTCAATTTCTTGATGG
TAGGAACAGTCTCCAGTGAATCCCTCCAGGCTTCAAATTGTTTTGATTCTTCATTAATGATTGCCTGAGCTTCCATTGCTTTTCGCAGGCGGTCTTCTTT
GTTAGCAGCCACAACCTCCTTCAGG