Detailed information on CNT30224110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728649Hordeum vulgareCorchorus capsularis37.510.1986.49111forward
CNT30405829Hordeum vulgareBeta vulgaris43.2415.583.59128forward
CNT30391299Hordeum vulgareTriticum turgidum94.2650.7398.21279forward
CNT30210789Hordeum vulgareHelianthus annuus29.3924.0385.0687forward
CNT30361875Hordeum vulgareSorghum bicolor38.8510.4388.7115forward
CNT30370118Hordeum vulgareOryza glumipatula10047.992.57296forward

Expression of CNT30224110

Peptides detected in this lncRNA

>peptide 1 (50 aa)
RRLCLLGDLLMTVRQDFSRTVSRKETTGGETIISAPPMKSSCRSFKQISR*

>peptide 2 (36 aa)
MICSPDSSMLQRTIGSDFASRFKPSTSLGRSDATLH*

>peptide 3 (97 aa)
TVMLVRGLAHDSAAGLLKNSLTEGDDRRGNNNFSTTHEVLLQILQTDFKVKLSSSSNDMLTRLFNATENHRVRLRQPLQTLNKLRKIRCHLALNSNTH

Sequence

>CNT30224110
AGACGGTTATGCTTGTTAGGGGACTTGCTCATGACAGTGCGGCAGGACTTCTCAAGAACAGTCTCACGGAAGGAGACGACAGGAGGGGAAACAATAATTT
CAGCACCACCCATGAAGTCCTCCTGCAGATCCTTCAAACAGATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCACCAGACTCTTCAATGCT
ACAGAGAACCATAGGGTCAGACTTCGCCAGCCGCTTCAAACCCTCAACAAGCTTAGGAAGATCAGATGCCACCTTGCACTGAACAGCAACACGCAC