Detailed information on CNT30223895


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184081Hordeum vulgareSecale cereale32.3533.1292.42264forward
CNT30555549Hordeum vulgareOryza glaberrima28.813.2281.7235forward
CNT30470818Hordeum vulgareSaccharum spontaneum27.9441.0183.33228forward
CNT30104106Hordeum vulgareOryza rufipogon28.811.8381.28235forward

Expression of CNT30223895

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTTACGRSARDDGRAGSPNIQNNLHCFLAFNRVSLSFDLGKCNPFLVGVHKVCFFLGS*

>peptide 2 (72 aa)
MMAARAHPTYKTISIASLLSTEFLFLLISESAILFLLECIKYASFLEVEPSVAVIEAGRWWFSCPKTDARRL*

>peptide 3 (79 aa)
MLLSWKLSLRLLSSKREGGGFHARRRMPDDYSFVIRISLGDAGCCCSFLDSLMSVIQIQSVSRGFWCNTVNCICISVKV*

>peptide 4 (68 aa)
EHYLILSERAVRRRRGGRSRLFHRPRRHRGPPSACGKVARDVWTEKTRHPRQQPATSDDDCLRSERSR*

>peptide 5 (44 aa)
RTLLDLIRASRPAAPRRPESSLPSAAPPPRSPKRLREGGARRLD*

Sequence

>CNT30223895
CCGAACACTACTTGATCTTATCCGAGCGAGCCGTCCGGCGGCGCCGCGGCGGCCGGAGTCGTCTCTTCCATCGGCCGCGCCGCCACCGCGGTCCCCCAAG
CGCTTGCGGGAAGGTGGCGCGCGACGTTTGGACTGAAAAGACGCGGCATCCGCGGCAGCAGCCGGCGACGAGCGATGACGACTGCCTGCGGTCGGAGCGC
TCGCGATGATGGCCGCGCGGGCTCACCCAACATACAAAACAATCTCCATTGCTTCCTTGCTTTCAACAGAGTTTCTCTTTCTTTTGATCTCGGAAAGTGC
AATCCTTTTCTTGTTGGAGTGCATAAAGTATGCTTCTTTCTTGGAAGTTGAGCCTTCGGTTGCTGTCATCGAAGCGGGAAGGTGGTGGTTTTCATGCCCG
AAGACGGATGCCCGACGACTATAGCTTTGTAATACGGATTTCGTTAGGAGATGCGGGCTGTTGCTGTTCTTTCTTGGATTCGTTGATGAGTGTCATCCAG
ATTCAGTCTGTTAGTAGAGGATTCTGGTGTAATACTGTTAATTGTATTTGTATATCAGTCAAGGTTTAGGGTCAACTTACGAGTTGACAAGTCGTTTTGA
GGTTCAGACTCGAATTCTAATCGTGACTAATCAAACACTAGTCGACATTAAATTGTAGTCAGTCGGCCCTAGAGTTAGTACTCATGGACTGTCTTAACTT
ATAATCCATGGTCTCGGTGCTCCGTGAGATGCCGTTGTGATATGATCTGTGAGGTGGCTGTATACTTAAATCTCAGCTTAACATTGTCAAATACAGTATG
TAATGTTAATTATCTG