Detailed information on CNT30223789


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 3e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664982Hordeum vulgareTriticum dicoccoides56.5752.293.39439forward
CNT30140763Hordeum vulgareLolium perenne33.6393.2181.23261forward
CNT30688823Hordeum vulgareTriticum urartu93.8170.8990.93728forward
CNT30117328Hordeum vulgareOryza nivara43.567381.07338forward

Expression of CNT30223789

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRAIEMPRVLSPAICMTLIKVTLDPTLLVTLGLSRAAALKKSSALTSIGFLQTNPLTRTGA*

>peptide 2 (90 aa)
PWVLAAERGNCNSGLMGVGVELKVNEPHGEDKYITFVEHLREELVSVGCRQVGCDKSDIQCPLEYREDLSGARVRMWRVLTQGSIVDARN*

>peptide 3 (55 aa)
MSATQKSWSGPGSEATACHEIKAKRATRRRKVGEDAIFSAPLGLVFSYIPEMFVG*

>peptide 4 (55 aa)
MSPTGKTNTSPLLSTFERNLFLLGAGRLDVTNPTYSVPSSTVRISVARGCVCGGF*

Sequence

>CNT30223789
CCCCTGGGTTCTGGCTGCTGAGCGCGGCAATTGCAACAGCGGGCTGATGGGGGTTGGGGTTGAACTGAAAGTGAATGAGCCCCACGGGGAAGACAAATAC
ATCACCTTTGTTGAGCACCTTCGAGAGGAACTTGTTTCTGTTGGGTGCAGGCAGGTTGGATGTGACAAATCCGACATACAGTGTCCCCTCGAGTACCGTG
AGGATCTCAGTGGCGCGAGGGTGCGTATGTGGCGGGTTCTGACCCAAGGGAGCATAGTCGATGCGCGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAA
TCTGCATGACGTTGATCAAGGTAACGTTGGACCCAACCTTGTTGGTCACCCTAGGCTTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAGCGTTGACATC
CATCGGGTTCTTGCAAACAAACCCATTGACACGCACTGGTGCATAGAGGAGATGTAGGGTGTAAGCTTAGGTATTACTAGGAAGTGATTTTAACATACAG
GTAATTTTCAGAAATTCATTTCTTGGTGATAGTACGACGGGAAAGCGGGAAGTAAGCAGTACCTGGTGAATGCATGTCGGCAACACAAAAGTCCTGGAGC
GGGCCAGGGTCGGAGGCAACAGCCTGCCATGAGATCAAGGCGAAAAGAGCAACGAGGAGAAGGAAGGTAGGGGAGGATGCCATTTTTTCAGCTCCTTTGG
GTCTTGTTTTCTCCTATATTCCTGAGATGTTTGTTGGGTGAGTGATGGTTGGAACATGCTGGGGATGTATGTTTTT