Detailed information on CNT30223592


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532757Hordeum vulgareEucalyptus grandis27.6924.5588.89108forward
CNT30372454Hordeum vulgareArabidopsis thaliana21.7917.7884.7185forward
CNT3021397Hordeum vulgareCitrullus lanatus20.7712.2486.4281forward
CNT30507454Hordeum vulgareNicotiana attenuata25.1315.185.7198forward
CNT3098615Hordeum vulgareSolanum tuberosum27.1820.6687.74106forward
CNT30392462Hordeum vulgareTriticum turgidum27.6926.699.07108forward
CNT30144688Hordeum vulgareMedicago truncatula23.5925.9286.9692forward
CNT3010240Hordeum vulgareZea mays46.9219.5190.16183forward
CNT30684179Hordeum vulgareTriticum urartu27.6917.2297.22108forward
CNT30721351Hordeum vulgareTriticum spelta46.9227.6485.79183forward
CNT30361411Hordeum vulgareSorghum bicolor46.6719.4789.01182forward
CNT3052700Hordeum vulgareAmborella trichopoda18.2122.4787.3271forward
CNT30148523Hordeum vulgareBrachypodium distachyon27.6916.7493.52108forward
CNT30575645Hordeum vulgareOryza barthii27.6912.7494.44108forward

Expression of CNT30223592

Peptides detected in this lncRNA

>peptide 1 (42 aa)
ACVGKPDNMHINQGAKQVQTYHRLLQHGCKPTTTKQSKHSNR*

>peptide 2 (48 aa)
MPSPTYQWTKARLAYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESC

Sequence

>CNT30223592
GCGTGTGTAGGCAAACCAGATAACATGCATATTAACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGCTCTTACAACACGGTTGTAAACCAACCACCA
CAAAGCAAAGCAAACATTCAAACAGATAAACCCACTCGGGCACATCACAGGGTAGCAGCAGCACCCCAGGAGGCAGGCCGCTTCTAGTACTCGTCGCCCT
CATCACCATCCTCACGGGCCTCGGAGAACTCTCCCTCCTCCATGCCCTCGCCCACGTACCAGTGGACAAAGGCACGCTTGGCGTACATGAGACAGCAGGC
CATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCGGCAACAGAGAGCTGCTC