Detailed information on CNT30223440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZY5|GL811_ORYSJ, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30467578Hordeum vulgareSaccharum spontaneum66.3441.8583.82272forward
CNT30572973Hordeum vulgareVitis vinifera26.5915.0881.65109forward

Expression of CNT30223440

Peptides detected in this lncRNA

>peptide 1 (68 aa)
VRVWWVLTQGSIVDAPTGKTNTSPLLSTFERNLFLLGAGRLDVTNPTYSVPSSTVRISVARGCVCGGF*

>peptide 2 (79 aa)
GACVVGSDPREHSRCPHGEDKYITFVEHLREELVSVGCRQVGCDKSDIQCPLEYREDLSGARVRMWRVLTQGSIVDARN*

>peptide 3 (60 aa)
MRAIEMPRVLSPAICMTLIKVTLEPTLFVTLGLSRAAALKKSSAFTSIGFLQTNPFTRTGE

Sequence

>CNT30223440
GGTGCGTGTGTGGTGGGTTCTGACCCAAGGGAGCATAGTCGATGCCCCCACGGGGAAGACAAATACATCACCTTTGTTGAGCACCTTCGAGAGGAACTTG
TTTCTGTTGGGTGCAGGCAGGTTGGATGTGACAAATCCGACATACAGTGTCCCCTCGAGTACCGTGAGGATCTCAGTGGCGCGAGGGTGCGTATGTGGCG
GGTTCTGACCCAAGGGAGCATAGTCGATGCGCGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAATCTGCATGACGTTGATCAAGGTGACGTTGGAGCC
AACCTTGTTTGTCACCCTAGGCTTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAGCGTTTACATCCATAGGGTTCTTGCAAACAAACCCATTTACACGC
ACTGGTGAAT