Detailed information on CNT30223426


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 6e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297939Hordeum vulgareTriticum aestivum48.7399.4892.71384forward
CNT30401458Hordeum vulgareTriticum turgidum49.7598.9991.33392forward

Expression of CNT30223426

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHVGNTKVLERARXGSDPKEHSRCVQLRCRGC*

>peptide 2 (55 aa)
MSPTGKTNTSPLLSTFERNLFLLGAGRLDVTNPTYSVPSSTVRISVARGCVCGGF*

>peptide 3 (59 aa)
MRAIEMPRVLSPAICMTLIKVTLDPTLLVTLGLSRAAALKKSSALTSIGFLQTNPLTRTG

>peptide 4 (61 aa)
MRAIEMPRVLSPAICMTLIKVTLDPTLLVTLGLSRAAALKKSSALTSIGFLQTNPLTRTGA*

>peptide 5 (80 aa)
CNSGLMGVGVELKVNEPHGEDKYITFVEHLREELVSVGCRQVGCDKSDIQCPLEYREDLSGARVRMWRVLTQGSIVDARN*

Sequence

>CNT30223426
TTGCAACAGCGGGCTGATGGGGGTTGGGGTTGAACTGAAAGTGAATGAGCCCCACGGGGAAGACAAATACATCACCTTTGTTGAGCACCTTCGAGAGGAA
CTTGTTTCTGTTGGGTGCAGGCAGGTTGGATGTGACAAATCCGACATACAGTGTCCCCTCGAGTACCGTGAGGATCTCAGTGGCGCGAGGGTGCGTATGT
GGCGGGTTCTGACCCAAGGGAGCATAGTCGATGCGCGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAATCTGCATGACGTTGATCAAGGTAACGTTGG
ACCCAACCTTGTTGGTCACCCTAGGCTTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAGCGTTGACATCCATCGGGTTCTTGCAAACAAACCCATTGAC
ACGCACTGGTGCATAGAGGAGATGTAGGGTGTAAGCTTAGGTATTACTAGGAAGTGATTTTAACATACAGGTAATTTTCAGAAATTCATTTCTTGGTGAT
AGTACGACGGGAAAGCGGGAAGTAAGCAGTACCTGGTGAATGCATGTCGGCAACACAAAAGTCCTGGAGCGGGCCAGGGTNGGTTCTGACCCAAAGGAGC
ATAGTCGATGCGTGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAATCTGCATGACGTTGATCAAGGTAACGTTGGACCCAACCTTGTTGGTCACCCTA
GGCTTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAGCGTTGACATCCATCGGGTTCTTGCAAACAAACCCATTGACACGCACTGGTG