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Detailed information on CNT30223394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000178, E-value = 8e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046714Hordeum vulgarePrunus dulcis17.0992.4986.29197reverse complement
CNT3092080Hordeum vulgareSolanum tuberosum24.247.8693.91279forward
CNT30555551Hordeum vulgareOryza glaberrima29.4932.6397.65340reverse complement
CNT30363889Hordeum vulgareSorghum bicolor19.5148.694.22225reverse complement
CNT30106724Hordeum vulgareOryza longistaminata54.2970.4297.76626forward
CNT30113381Hordeum vulgareFicus carica17.3544.8496200reverse complement

Expression of CNT30223394

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKRTPIGECNREPEIRCEQSVEGAECGCTHSNGVPFA*

Sequence

>CNT30223394
TTTGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGTTGCCGTAGAGCGCCCTACGGAGTTGTACAAAGTCAGCA
ACCATTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATTCGGCCAAAGAA
GGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCGGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACGCGAGAAAGGGGGACCACC
CTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGAAAAGAACCCCAATCGGGGAGTGCAATAGAGAACCTGAGAT
CCGATGCGAACAATCAGTCGAAGGAGCGGAGTGCGGGTGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAAGAAATGGGAACAGCGGCT
TAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAA
ATGTCTGACGGGTCAAGTGATTCACCAAAGCGACGAGACCTTGAAAGAAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTT
GGTGACAAGACCTGGAGATATCAGAAGTGAGCATGCTGACATGAGTAACTAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGT
TCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAA
CCATGCCTGGATCGTCGGAGCAAATTGGATGATCGGGCCGAGGGCTGCCCCCTTTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAA
GCCGTCAACTAATTCAGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGCGAAGCTCTCATCTTTGGCGACCAGCAAACGGAGG
GCTAAAACCTGTAGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTGCGCTTC