Detailed information on CNT30223327


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30296867Hordeum vulgareTriticum aestivum78.0260.688.26426forward
CNT30218871Hordeum vulgareKalanchoe fedtschenkoi21.2526.6787.07116forward
CNT30371341Hordeum vulgareOryza glumipatula22.7153.2291.94124forward

Expression of CNT30223327

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLKRCKGSCRRRSLPLGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVL*

>peptide 2 (37 aa)
MISRCIGLCQMGILNIFRDILTKHAQQSLGCDADLGR*

>peptide 3 (58 aa)
MCPYSSSFSTVIFGCSKAAHLTLLDHVCSLTVPLPDELGWLSSVPTLQLSGTHHDGAVA

>peptide 4 (33 aa)
MSAASRYRCLMSLAGSPAFPLSSSPALIMMGLWQ

Sequence

>CNT30223327
CAAATTAATACTTTCTTGTTCTGTTTGCAACAAAGCAGAAGGAGTCTCCACTGAAGGAATGAATACTGAGAGTGACAAATGATAAGTAGGTGTATTGGTC
TTTGCCAAATGGGTATACTCAATATATTTAGAGATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGACTTAGGTAGGTAAAACATCAG
ATATTAAAAGTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCCGTCGTCGCTCCTTGCCGTTGGGAACCAGTCTTCATCGCATCCTGGTTAGCATCACCCA
GAGCTGCCTGGCTCATGTAGGTGTCAGCAAGCTGCACACGCTTGACATTGTCCTGCTCCTGGACGAGCATGTGCCCGTACTCTAGCAGCTTCTCGACTGT
CATCTTTGGCTGCTCGAAGGCAGCACATCTTACCCTTCTTGATCATGTCTGCAGCCTCACGGTACCGCTGCCTGATGAGCTTGGCTGGCTCTCCAGCGTT
CCCACTCTCCAGCTCTCCGGCACTCATCATGATGGGGCTGTGGCAA