CANTATAdb - search

Detailed information on CNT30223170

BLAST search results

BLAST vs Swiss-Prot:
sp|P85086|RCA_ARAHY, E-value = 4e-06

BLAST vs NONCODE:
NONVVIT000580, E-value = 5e-28

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30617865	Hordeum vulgare	Sesamum indicum	38.07	68.27	86.49	185	forward
CNT30727556	Hordeum vulgare	Corchorus capsularis	44.44	27.8	85.65	216	forward
CNT30524690	Hordeum vulgare	Phaseolus vulgaris	44.24	21.59	82.79	215	forward
CNT30171779	Hordeum vulgare	Trifolium pratense	44.24	46.54	83.72	215	forward
CNT30144840	Hordeum vulgare	Medicago truncatula	44.24	68.91	84.65	215	forward
CNT30662818	Hordeum vulgare	Triticum dicoccoides	45.06	59.03	96.35	219	forward
CNT3075041	Hordeum vulgare	Brassica juncea	31.69	64.98	86.36	154	forward
CNT30261189	Hordeum vulgare	Brassica rapa	44.65	59.62	86.64	217	forward
CNT306857	Hordeum vulgare	Zea mays	45.47	10.38	89.14	221	forward
CNT30208512	Hordeum vulgare	Helianthus annuus	44.86	32.3	87.16	218	forward
CNT30360399	Hordeum vulgare	Lactuca sativa	44.24	31.39	89.3	215	forward
CNT3024431	Hordeum vulgare	Populus trichocarpa	43	43.54	82.78	209	forward
CNT30150829	Hordeum vulgare	Brachypodium distachyon	30.86	31.78	95.33	150	forward

Expression of CNT30223170

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MLKRCKGSCQRREIVTGDDDGHTGVLLLVVHARELHVGGGIGDVHQGGVHHLVVDGVLRGSAHPTRTSVKIVDEEAAHLTLLDHGGVHHL

>peptide 2 (70 aa)
MGTRGFSSLLYMPGSCTLVGASAMFIRVAFTIWLLTVYCVVPPILPAPASRSLMKRQHILPFLIMVAFTIW

>peptide 3 (37 aa)
MISRCIGLCQMGILNIFRDILTKHAQQSLGCDADLGR*

Sequence

>CNT30223170
CAAATTAATACTTTCTTGTTCTGTTTGCAACAAAGCAGAAGGAGTCTCCACTGAAGGAATGAATACTGAGAGTGACAAATGATAAGTAGGTGTATTGGTC
TTTGCCAAATGGGTATACTCAATATATTTAGAGATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGACTTAGGTAGGTAAAACATCAG
ATATTAAAAGTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCCAGCGTCGAGAAATCGTTACCGGTGACGACGATGGGCACACGGGGGTTCTCCTCCTTGT
TGTACATGCCAGGGAGCTGCACGTTGGTGGGGGCATCGGCGATGTTCATCAGGGTGGCGTTCACCATCTGGTTGTTGACGGTGTACTGCGTGGTTCCGCC
CATCCTACCCGCACCAGCGTCAAGATCGTTGATGAAGAGGCAGCACATCTTACCCTTCTTGATCATGGTGGCGTTCACCATCTGGT