Detailed information on CNT30221871


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Hordeum vulgareOryza sativa40.8732.393.6294forward
CNT30672185Hordeum vulgareSetaria viridis5021.0290.43115forward
CNT30520486Hordeum vulgareSetaria italica5021.8690.43115forward
CNT30436523Hordeum vulgareAegilops tauschii45.2215.7396.15104forward
CNT30251998Hordeum vulgareAvena sativa53.4842.7191.87123forward
CNT30659005Hordeum vulgareTriticum dicoccoides66.0953.5297.37152forward
CNT30450016Hordeum vulgareSaccharum spontaneum5010.4192.17115forward
CNT30680544Hordeum vulgareTriticum urartu98.787.9890.75227forward
CNT30352666Hordeum vulgareEragrostis tef46.9613.3592.59108forward
CNT30362958Hordeum vulgareSorghum bicolor5023.3393.91115forward
CNT30370761Hordeum vulgareOryza glumipatula51.311.993.22118forward
CNT30325402Hordeum vulgareAsparagus officinalis29.575.9386.7668reverse complement
CNT30147603Hordeum vulgareBrachypodium distachyon39.1330.288.8990forward
CNT30100764Hordeum vulgareOryza rufipogon46.0939.2691.51106forward
CNT30496353Hordeum vulgareDigitaria exilis5010.0593.04115forward

Expression of CNT30221871

Peptides detected in this lncRNA

>peptide 1 (75 aa)
LVIVVVEVGLGLGRGRGVEEVVGVEQGGDVVDVVGEVLVELVLAEPVVAEPRGGLDELPPLRRVVLHLLERRRDEH

>peptide 2 (55 aa)
ACNCSGGSRAGAGARAGSRRGRRRRAGRRRRRRRRRGPRRAGAGGTSGRGTTRWS*

Sequence

>CNT30221871
GGCTTGTAATTGTAGTGGTGGAAGTCGGGCTGGGGCTGGGGCGAGGGCGGGGAGTAGAAGAGGTCGTCGGCGTCGAGCAGGGCGGCGACGTCGTCGACGT
CGTCGGCGAGGTCCTCGTAGAGCTGGTGCTGGCGGAACCAGTGGTCGCGGAACCACGCGGTGGTCTTGACGAGCTCCCACCACTCCGGCGAGTAGTCCTC
CACCTTCTTGAACGCCGCCGGGATGAACAT