Detailed information on CNT30221423


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9T0I5|PRP4_ARATH, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109239Hordeum vulgareOryza longistaminata77.5636.3582.74197forward
CNT30149774Hordeum vulgareBrachypodium distachyon33.8610.1387.2186forward

Expression of CNT30221423

Peptides detected in this lncRNA

>peptide 1 (41 aa)
AADGVAVLSPATMPKVVPSETGTILDGSWPGHGVLEAALWS*

>peptide 2 (56 aa)
LQTAWRSCRRRRCQRWCPRKQARSWMVPGRGTACWRRRCGAERHSRRRGGQWPGAR*

>peptide 3 (83 aa)
CRRRGGLVAGDDAKGGALGNRHDLGWFLAGARRVGGGAVELSDTVGAVEVSGQGHAEGAGGIQGTHRFALVLAIDVLALDRHLE

Sequence

>CNT30221423
GCTGCAGACGGCGTGGCGGTCTTGTCGCCGGCGACGATGCCAAAGGTGGTGCCCTCGGAAACAGGCACGATCTTGGATGGTTCCTGGCCGGGGCACGGCG
TGTTGGAGGCGGCGCTGTGGAGCTGAGCGACACAGTCGGCGCCGTGGAGGTCAGTGGCCAGGGGCACGCTGAAGGCGCCGGTGGTATCCAGGGCACCCAC
CGCTTTGCTCTCGTACTGGCCATCGATGTTCTTGCACTTGATCGCCACCTGGAG