Detailed information on CNT30220972


BLAST search results

BLAST vs Swiss-Prot:
sp|P27337|PER1_HORVU, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30348947Hordeum vulgareEragrostis tef45.0229.0583.21131forward
CNT30368355Hordeum vulgareSorghum bicolor28.5214.7484.3483forward

Expression of CNT30220972

Peptides detected in this lncRNA

>peptide 1 (34 aa)
AGLDAKFRTVLSVVSLLNSTWSECRSPFWDMRLV*

>peptide 2 (50 aa)
RRVGRKVPDGVVGGVVVEQHLVRVQEPLLGHEVGVVGVVEPVGRGRVEVR*

Sequence

>CNT30220972
CGCCGGGTTGGACGCAAAGTTCCGGACGGTGTTGTCGGTGGTGTCGTTGTTGAACAGCACCTGGTCCGAGTGCAGGAGCCCCTTCTGGGACATGAGGTTG
GTGTAGTAGGCGTTGTCGAACCCGTTGGGCGTGGTCGTGTCGAGGTTCGCTAGGTTGCCGTCGCCGGAGCCGGTTGTCTGTGGGCAGTTGGCCTTGAGCG
ACGTCGCGAAGGCGGCGTTGATGTTCTTCTTGAGGAACGCGGCCTCGAGCTGCGACCGGCTGGAGCCAGGGCCAGGGAGGTCGCTGTTTGC