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Detailed information on CNT30220948

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696585	Hordeum vulgare	Oryza sativa	24.38	68.54	81.64	207	forward
CNT30522452	Hordeum vulgare	Setaria italica	20.97	26.41	82.02	178	forward
CNT30309159	Hordeum vulgare	Triticum aestivum	57.71	85.81	90.82	490	forward
CNT30387549	Hordeum vulgare	Triticum turgidum	28.27	91.6	85.42	240	reverse complement
CNT30555184	Hordeum vulgare	Oryza glaberrima	15.43	20.31	80.92	131	forward
CNT30437233	Hordeum vulgare	Aegilops tauschii	42.64	47.88	89.5	362	forward
CNT30252009	Hordeum vulgare	Avena sativa	27.09	23.19	89.13	230	forward
CNT30658938	Hordeum vulgare	Triticum dicoccoides	53.47	60.94	89.65	454	forward
CNT30132649	Hordeum vulgare	Lolium perenne	53.83	30.28	82.49	457	forward
CNT30103549	Hordeum vulgare	Oryza rufipogon	24.5	30.45	82.21	208	forward
CNT30577809	Hordeum vulgare	Oryza barthii	24.15	24.52	80.49	205	forward
CNT30117627	Hordeum vulgare	Oryza nivara	16.14	20.85	83.94	137	forward
CNT30551656	Hordeum vulgare	Oryza brachyantha	22.38	22.27	82.11	190	forward

Expression of CNT30220948

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKVSGEGYAEGAGAVKGAHCLALVVAVDVLALDCHLE

>peptide 2 (59 aa)
MMCFLMGPHRVMDAHSGDAADGMTTLSPATMPKVVPSDTGTILDGFWPGHGALEAALWS*

>peptide 3 (31 aa)
MASGRGTARWRRRCGAERRSRRHEGQRRGVR*

Sequence

>CNT30220948
GGCAGCACACAGCAGAACAAGATCAAGCCAAAAGAAGCCAACAGCGGCAATAACTCCATCGACTCAATTGGACTTGATTGATTAACTTACTTGATATCCC
ATAACAATTTCGTATACAAAACACACACCGAAATTACAAATCTTTGAAAAGCAATACAAGCACACTGATCCCTGTGTTCCTCACAACTGTTATTCTGGAC
TCTCAACTCCACAGCGCAGATTCTAAAACGCAGCAGCGAATGGCACAAGACCAAAACAATACCCACGCATATGCAACTGATCATAAATAGCAACAACGTC
GATCACTCACTGATCATAGAACCTGTGATGAGATTTCAGTGTCGCGTGGACTAGCTCAGTGGTGTCCGTGGTATCCGCCGCCACCGCCACCGCCGTAGGT
GGGCGTGGGAGGGACGGGGTGGTAGTCCGGGTGGGGTTGCGGCTTGGGCTCGGGCTTGGGCACGGGGCCGTTGTCCGGGTGTGGCTCGGGCTTGGGCTCC
GGCTTCGGCGGCACTGGCTTCTTGTGGTGGAAGTGCTCCATGATGTGTTTCTTGATGGGCCCGCACAGGGTCATGGACGCGCACTCCGGCGACGCTGCAG
ACGGCATGACAACGTTGTCGCCGGCGACGATGCCGAAGGTGGTGCCCTCGGACACCGGGACGATCTTAGATGGCTTCTGGCCGGGGCACGGCGCGTTGGA
GGCGGCGCTGTGGAGCTGAGCGACGCAGTCGGCGCCATGAAGGTCAGCGGCGAGGGGTACGCTGAAGGCGCCGGTGCTGTCAAGGGCGCCCACTGCCTTG
CTCTCGTAGTCGCCGTGGACGTTCTTGCACTTGACTGCCACCTGGAGAC