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Detailed information on CNT30220711


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676038Hordeum vulgareSetaria viridis19.9846.4194.69207forward
CNT30315505Hordeum vulgareCorylus avellana17.6640.0487.98183forward
CNT30702570Hordeum vulgareQuercus lobata12.6426.290.08131forward
CNT30379403Hordeum vulgareManihot esculenta11.220.6484.48116forward
CNT30526697Hordeum vulgarePhaseolus vulgaris17.3768.4484.44180forward
CNT30632073Hordeum vulgareVigna unguiculata19.1126.3385.35198forward
CNT30196132Hordeum vulgarePisum sativum12.4527.2286.05129forward
CNT30163372Hordeum vulgarePistacia vera11.220.1482.76116forward
CNT30178569Hordeum vulgareSecale cereale27.5144.0594.04285forward
CNT30656927Hordeum vulgareTriticum dicoccoides37.4567.4895.36388forward
CNT30597299Hordeum vulgareFraxinus excelsior19.0235.8881.22197forward
CNT303693Hordeum vulgareZea mays13.1339.4297.79136forward
CNT30606042Hordeum vulgareGossypium raimondii12.9343.9385.82134forward
CNT30205622Hordeum vulgareHelianthus annuus7.1427.4189.1974forward
CNT30360466Hordeum vulgareLactuca sativa11.227.5586.21116forward
CNT3052765Hordeum vulgareAmborella trichopoda12.8426.1888.72133forward
CNT3024772Hordeum vulgarePopulus trichocarpa19.0233.2279.7197forward
CNT30103076Hordeum vulgareOryza rufipogon18.2431.3492.59189forward
CNT30574682Hordeum vulgareOryza barthii17.2826.1797.21179forward
CNT30174435Hordeum vulgareVigna angularis19.1129.5583.33198forward
CNT30557628Hordeum vulgarePanicum hallii29.1554.2287.42302forward
CNT3065708Hordeum vulgareSelaginella moellendorffii12.3636.8985.94128forward
CNT30114697Hordeum vulgareEutrema salsugineum12.6421.3784.73131forward

Expression of CNT30220711

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MNLLEHLEDVDLVSLHALLGLAALLPAPGLRLAAGLLGRRLPRRQPLLGLGLLARGGLLRRLLDLVLGGRLLVWISLEVMVGFLL*

>peptide 2 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCFSTLKM*

>peptide 3 (50 aa)
MKFSNSTACNINIKIDRQLQLIQRTSQQSVGNHTAFRQQLLLLLLAVADR*

Sequence

>CNT30220711
ATGAAATTCAGTAATAGTACTGCTTGCAACATAAACATTAAGATAGATCGGCAGCTTCAGCTCATACAACGAACGAGCCAACAAAGTGTTGGCAACCATA
CAGCATTCAGACAACAACTACTACTACTTCTACTGGCAGTGGCAGATAGATAACCAGGTCAGCAACCACTAAGAGGAGACAACGGCAGACAACCGCATCT
GCTACTTCAGGCGACGGACGCATCGGCAGTCTAGGAGGAGGTGAACTTGGTGACTGCCTTGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCC
GACTCCCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGATGAACCTGCTTGAGCA
CCTTGAAGATGTAGATCTTGTAAGTCTCCACGCTCTTCTTGGCCTTGCTGCCCTTCTTCCGGCCCCTGGTCTTCGCCTCGCCGCCGGCCTCCTTGGACGC
CGTCTTCCCCGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTGCCCGCGGGGGTCTTCTCCGCCGCCTTCTCGACCTTGTTCTCGGCGGCCGGCTTCTTG
TCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCCGACTCCCCGGCGAGCTTCTCGAAGATGTCATTGATGAAGGAGTT
CATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGCC
TTGCTGCCCTTCTTCCGGCCCCTCGTCTTCGCCTCGCCGCCGGCCTCCTTGGAGGCCGTCTTGCCCGCCGGTAGCCGCTTCTCGGCCTTGGGCTTCTTGC
CTGCCGGGGTCTTCTCTGCTGCCTTCTCCACCTTGTTCTCGGCGGCCGGCTTCTTGTCTGCCTTGGGGGCCATGGCTGCGGCTGGAGCTTCGGAGGTGAG
AGAGGGAGTGAGGTGTTTCGCTCGGAGGTGGGGAAT