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Detailed information on CNT3021984


BLAST search results

BLAST vs Swiss-Prot:
sp|P35007|SAHH_CATRO, E-value = 4e-145

BLAST vs NONCODE:
NONBNAT006042, E-value = 1e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Populus trichocarpaSetaria viridis21.2792.1185.93455forward
CNT30702258Populus trichocarpaQuercus lobata7.4834.0492.5160forward
CNT30376211Populus trichocarpaArabidopsis thaliana17.3951.4586.29372forward
CNT30619260Populus trichocarpaSesamum indicum17.7235.5985.49379forward
CNT3020603Populus trichocarpaCitrullus lanatus17.6724.4285.19378forward
CNT3072357Populus trichocarpaQuercus suber14.5430.2887.14311forward
CNT30380227Populus trichocarpaManihot esculenta7.4838.3793.75160forward
CNT30402445Populus trichocarpaBeta vulgaris5.827.9389.52124forward
CNT30505192Populus trichocarpaNicotiana attenuata8.0930.6287.28173forward
CNT30709695Populus trichocarpaGlycine max5.9838.3292.97128forward
CNT3096327Populus trichocarpaSolanum tuberosum29.6979.8782.05635forward
CNT30221496Populus trichocarpaHordeum vulgare3.638.3184.4277forward
CNT30543653Populus trichocarpaBrassica napus16.2750.4383.91348forward
CNT30511017Populus trichocarpaSolanum lycopersicum18.5666.6184.38397forward
CNT30144739Populus trichocarpaMedicago truncatula10.6148.9284.58227forward
CNT30312478Populus trichocarpaCamelina sativa3.7432.7986.2580forward
CNT30261371Populus trichocarpaBrassica rapa15.0176.7984.42321forward
CNT30612558Populus trichocarpaArabis alpina14.9684.8885320forward
CNT30601056Populus trichocarpaFraxinus excelsior11.6946.2182250forward
CNT30139718Populus trichocarpaLolium perenne3.9722.4983.5385forward
CNT30607325Populus trichocarpaGossypium raimondii14.2123.5782.24304forward
CNT30231757Populus trichocarpaAnanas comosus4.8639.5486.54104forward
CNT30720770Populus trichocarpaTriticum spelta8.0928.8385.55173forward
CNT30365203Populus trichocarpaSorghum bicolor5.0550.2385.19108forward
CNT30354795Populus trichocarpaLactuca sativa20.852.8580.22445forward
CNT30705212Populus trichocarpaPrunus avium9.4454.8987.62202forward
CNT30645006Populus trichocarpaCannabis sativa25.7666.9582.21551forward
CNT30329805Populus trichocarpaDioscorea rotundata13.9850.9484.62299forward
CNT30103876Populus trichocarpaOryza rufipogon21.1810086.31453forward
CNT30117878Populus trichocarpaOryza nivara21.0410086.44450forward

Expression of CNT3021984

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MNQESGITAIINNQIRTTIWAPVKSSLSTPPVLLEGLPFPGKNSSRITGNSGSGMILSGENIARTPTNLST*

>peptide 2 (36 aa)
HIFSSHVFPTTKTQILGKKLKPNNIGQIIMKIQKKQ*

>peptide 3 (32 aa)
MIMSLLPVVVTKISASEITSSRVRTCRPSMRA*

>peptide 4 (29 aa)
MVVKGRIQYGRTSNQAFQLRPVRFRDGRSQ

Sequence

>CNT3021984
CATATATTTTCCTCCCATGTCTTCCCCACCACCAAAACACAAATCCTAGGAAAAAAATTGAAGCCTAATAATATAGGACAAATCATCATGAAAATACAAA
AGAAACAATAGCGCCGTTTCCAATCACGTTTTGCCTCAAGTTCCATCTCTCAGTACCTGTACTGAGCAGGCTTGTATGGACCCTCGATTGGCACGTTGAT
GTAGTCAGCCTGGTCCTTGGAGAGCTTGGTAAGCCTAGCTCCTAGCTTGCCAAGGTGAAGGGAAGCAACCTTCTCATCAAGGTGCTTGGGCAAGACATAG
ACCTTCCTCTCGTACTTGCCGGTTTTCCTCTCGTTCCACAGCTCAAGCTGGGCGATCACCTGGTTGGTGAATGAGCAGGACATCACAAAGCTGGGGTGAC
CGGTGGCACATCCCAGGTTCATGAGACGTCCCTCAGCCAGGACAATGATGCCGGAGTTGGTCTCAAGTCCAAGCATGTCGATTTCATTATCGAAGTGACC
GATGTTGCAGACAATGGCATTGTTCTTCATCTTCCTCATGTGATCAACCATGATAATGTCCTTGTTACCAGTGGTGGTGACAAAGATATCAGCCTCGGAG
ATAACATCTTCAAGAGTCAGGACCTGTAGACCCTCCATGAGAGCCTGAAGCGCGCAAATGGGATCAATCTCGGTCACAATCACACGAGCTCCAGCTTGCT
TCATGGCAGCAGCACAGCCCTTGCCAACATCACCATAACCACAGACAACAGCAACCTTGCCGGCAATCATGACATCAGTAGCTCTCATCAAACCATCAGG
GAGAGAGTGGCGGCATCCATACAAGTTGTCGAACTGTACACACAAAGATTAAGAGCAATTGTTAGACTACAACAGAGAAAAAGAATCGTGCAGAATCACA
TACAAGATTTCAGAAGTCATCAATCAACAACTGATGATTGAGAGTTGAAAACCATATTCAAAACATCTAGCACCACACATGAATCATGCAATGAACCTTG
ATAAAAATCGTGGAGTACTAATCACCAATTGGATTAAATAATAGAGTAACAAAAAACTTGCAAGTTCTCATAAAATAAGAATCGTGCGAAAGTTCCGAAG
TCTCATAGAATATTCTAAAACAAGTAGCATGATTCTGATCTTAAAGTCGAAACATTTTTGCTTCTTAAACAAATCAAAAGCTTAGAACTTGAAAGAATCT
TTTCATCATAACCTCAAAAAAAATATCTTACAAAAAACTCACACAATAATTGACAGTAATATCTCTTTGATTCTAAGATATCTCAATAACCACACATCAT
TGCAAATCTATCAAACAAGTTCACAGTATTTATGTTGAAACTAAGTGGAAATATCGACAACATTGAAACAAATCCAGTTAATATCAGATCTAAAACAAAA
ACCCATTAATCATATCAGATCTAAAACATAAATCAATAACTAAACACATAACAGATCTATACAGCAAAAACCCAGATCTTAAAAAACAATACCTTGCTCT
TGGTGACAGAGTCGTTGACATTAATAGCAGGGAAAAGTAAAGTCCCATTAATCTGCATTTGATACAATCTCTTGACACCAGTTGTAGTTTCTTCCGAAAC
ACCAACCAATCTTTCCTTCATCTTGTGATACTTCTTAGGATCAGACTTCAATCCATCTCTAATAATTGTCAAAACAATCTGGAACTCAGCATTATCAGTC
GAAGCTGGATCTGGGGAAGCACCAGTCTTCTCATAAATCTCCTCAGCCTTCACACCTTCATGAATCAAGAGAGTGGCATCACCGCCATCATCAACAATCA
AATCAGGACCACCATCTGGGCCCCAGTCAAGAGCTCTCTCAGTACACCACCAGTACTCCTGGAGGGTCTCCCCTTTCCAGGCAAAAACAGCAGCCGAATC
ACGGGCAATAGCGGCAGCGGCATGATCTTGAGTGGAGAAAATATTGCAAGAACACCAACGAACCTCAGCACCTAAGGCAGTTAAAGTTTCAATCAAGACA
GCAGTTTGGATAGTCATGTGAAGGGAACCAGTGATCCTGGCTCCCTTGAATGGTTGTGAAGGGCCGAATTCAGTACGGCAGGACATCAAACCAGGCATTT
CAACTTCGGCCAGTTCGATTTCGAGACGGCCGAAGTCAG