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Detailed information on CNT30219776


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 5e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Hordeum vulgareSetaria viridis57.2458.9295.85241forward
CNT30523218Hordeum vulgareSetaria italica57.0143.9695.83240forward
CNT30549690Hordeum vulgareIpomoea triloba27.7927.8686.32117forward
CNT30617135Hordeum vulgareSesamum indicum57.2424.0382.99241forward
CNT30196946Hordeum vulgarePisum sativum33.9719.9782.52143forward
CNT30178072Hordeum vulgareSecale cereale58.9145.7697.98248forward
CNT30286550Hordeum vulgareTriticum aestivum58.9141.0697.98248forward
CNT30394717Hordeum vulgareTriticum turgidum57.7248.2196.3243forward
CNT30435717Hordeum vulgareAegilops tauschii58.9140.8697.98248forward
CNT30252143Hordeum vulgareAvena sativa56.0622.8296.19236forward
CNT30656490Hordeum vulgareTriticum dicoccoides58.1939.6497.96245forward
CNT30471244Hordeum vulgareSaccharum spontaneum58.9125.9196.37248forward
CNT30687044Hordeum vulgareTriticum urartu57.7223.8595.47243forward
CNT30645456Hordeum vulgareCannabis sativa46.0825.2986.6194forward
CNT3024855Hordeum vulgarePopulus trichocarpa25.4218.2384.11107forward
CNT30331117Hordeum vulgareDioscorea rotundata36.8216.3780.65155forward
CNT30147953Hordeum vulgareBrachypodium distachyon57.9628.0894.26244forward
CNT30117618Hordeum vulgareOryza nivara35.6333.3396150forward

Expression of CNT30219776

Peptides detected in this lncRNA

>peptide 1 (52 aa)
QDKITSTIFGETSLISNDRSEYLCCTIQFEVQRKQRTTQVAASSSNRSLQED*

>peptide 2 (71 aa)
ARQNHKHYIWRDKFDFQRQKRISLLHDSVRSTEETENYTSRGLIKQSESAGRLMTTSGPSRRIRRGCVPGA*

Sequence

>CNT30219776
GCAAGACAAAATCACAAGCACTATATTTGGAGAGACAAGTTTGATTTCCAACGACAGAAGCGAATATCTTTGTTGCACGATTCAGTTCGAAGTACAGAGG
AAACAGAGAACTACACAAGTCGCGGCCTCATCAAGCAATCGGAGTCTGCAGGAAGACTGATGACCACCAGCGGGCCTAGCCGCCGAATCCGTAGAGGGTG
CGTCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGA
GGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGACGGATGGCAGGCTTGGTGAT
GCCCTGGATGTTGTCGCGCAG