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Detailed information on CNT30211318


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-53

BLAST vs NONCODE:
NONBNAT006984, E-value = 4e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677865Helianthus annuusSetaria viridis29.0526.2281.42113forward
CNT30375418Helianthus annuusArabidopsis thaliana33.6855.5185.5131forward
CNT30617135Helianthus annuusSesamum indicum72.4928.1279.43282forward
CNT30197514Helianthus annuusPisum sativum75.3236.6779.86293forward
CNT3042757Helianthus annuusPrunus dulcis80.4651.6581.47313forward
CNT30284197Helianthus annuusTriticum aestivum64.5236.778.88251forward
CNT30221015Helianthus annuusHordeum vulgare51.4137.9578.5200forward
CNT30386576Helianthus annuusTriticum turgidum64.5242.8378.49251forward
CNT3086297Helianthus annuusVigna radiata76.8625.7180.94299forward
CNT30172567Helianthus annuusTrifolium pratense79.9545.682.64311forward
CNT30440184Helianthus annuusAegilops tauschii20.5725.8183.7580forward
CNT30244338Helianthus annuusAvena sativa60.6742.5279.24236forward
CNT30655816Helianthus annuusTriticum dicoccoides64.5239.4778.09251forward
CNT30450830Helianthus annuusSaccharum spontaneum25.1911.8482.6598forward
CNT30139599Helianthus annuusLolium perenne20.5716.748580forward
CNT30357929Helianthus annuusLactuca sativa67.8758.9379.55264forward
CNT30645276Helianthus annuusCannabis sativa75.0654.0781.16292forward
CNT30148252Helianthus annuusBrachypodium distachyon29.5628.481.74115forward

Expression of CNT30211318

Peptides detected in this lncRNA

>peptide 1 (43 aa)
IPYNIITDLTINLRNRTKFFLASSKHRRHPSPSLFSGERAPCR*

>peptide 2 (33 aa)
MTLCSSLSQPLSSLSTTRHCCSKISINKSCWVYD

Sequence

>CNT30211318
ATTCCATATAATATCATCACAGACTTGACCATTAACCTCCGAAACCGTACAAAGTTCTTCCTTGCCTCTTCAAAGCATAGACGACATCCATCGCCGTCAC
TGTTTTCCGGCGAGCGTGCTCCGTGTAGGTAACAGCGTCACGAATCACATTCTCCAAAAATATCTTCAGAACGCCACGAGTCTCTTCGTATATGAGACCG
CTGATTCTCTTGACTCCACCTCTTCTAGCGAGCCTCCTGATTGCAGGTTTGGTGATACCCTGAATGTTATCCCGGAGAACTTTCCGATGACGCTTTGCTC
CTCCCTTTCCCAGCCCCTTTCCTCCCTTTCCACGACCAGACATTGTTGCAGTAAGATTTCGATTAACAAAAGCTGTTGGGTTTATGATA