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Detailed information on CNT3021102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30230656Citrullus lanatusAnanas comosus8.0939.1187.588forward

Expression of CNT3021102

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGKVINGVCGQVRDRIRDGGGCFLNRRFFLANTRRRVLKKNLKTISSSAK*

>peptide 2 (32 aa)
MAFVVKFVIEYEMVAGVFLIEDFFWQTQGGEF*

>peptide 3 (48 aa)
MRIRTGVFVRNNIWPGVLSENPILCFVCELNMGIAMDSSGIVGTITRS*

>peptide 4 (67 aa)
MGTILFCAAPERYEAPSFSIYVFNCYINPYGIKIPLFFFAVKFVFCFVFDSARMLLEACNWHSLFLG*

Sequence

>CNT3021102
TGAGTAAGGAAAACAAAGTGGTCGGGGGGATCCGGCCGCAGCGCTTACCATTGTTATGCGCATGAATTTGTGGAGGGGTTAAAGGCTGGCCGATTGTTGA
CGCTGCTTACTTTGCAGAACTCTTTCGTGCTGGCCTCCCAATTTACCCACCCCCAATTTCAGTTCTAAACTTCCCTATTATTATTCCCAACCCCAATTTG
AATATTCGTTTGAGAAACTTCCTTCGATATTTGTAGGAACGTTGCACGGATTTTATCGAAGAACCTAATTAGAGTTTCAGAAATGTGAATCGAACGGGAT
TTGTTAGGACATTTATACGGATTTAATCGGGAGAACACTAATTTGAGTTTTCATTTGTTTCCAATGCGCATTCGAACCGGGGTTTTTGTAAGGAACAATA
TTTGGCCGGGGGTATTATCTGAAAACCCTATTTTATGTTTCGTTTGTGAATTGAATATGGGAATTGCAATGGATTCGTCGGGAATCGTAGGAACAATTAC
CAGATCATAACCATGCCTTAATTTCATTCTTCATGGGGAAAGTTATCAATGGCGTTTGTGGTCAAGTTCGTGATCGAATACGAGATGGTGGCGGGTGTTT
TCTTAATAGAAGATTTTTTTTGGCAAACACAAGGAGGAGAGTTTTAAAGAAAAATCTGAAGACCATTTCTTCATCAGCCAAATAAATATGGTCCAAGTCT
GCTAACAACTGATTTATCGAAGACCGTGCATCGAAGAGCTTTTGAATTTGGTGGTAAAGAAATGGGGACCATTTTGTTTTGTGCAGCTCCAGAAAGGTAC
GAGGCTCCTAGTTTTTCTATTTACGTGTTCAACTGTTACATCAATCCCTACGGAATCAAAATTCCCTTGTTCTTTTTTGCTGTAAAATTTGTTTTTTGTT
TCGTTTTTGATTCTGCTCGTATGCTTTTAGAGGCTTGCAATTGGCATTCTTTGTTCCTTGGTTAAACCTCAATATTCTGCATTGGCTTTCTAGTTATCAT
CTTTATGCTATATTTTCTTGTCGTTTTTAAGGTCATTTGTTTCTCTGCCTTTCTACCCCTGTACTCTTTTTGGTCGGGAGGATATGCC