Detailed information on CNT3019818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZ99|GL89_ORYSJ, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515314Citrullus lanatusJuglans regia52.0323.3782.47154forward
CNT3045720Citrullus lanatusPrunus dulcis51.3525.3381.58152forward
CNT30638659Citrullus lanatusCapsicum annuum27.0312.088580forward
CNT3090146Citrullus lanatusSolanum tuberosum27.0310.4387.580forward
CNT30573001Citrullus lanatusVitis vinifera20.277.6491.6760forward
CNT30706384Citrullus lanatusPrunus avium26.6912.488.6179forward
CNT30118053Citrullus lanatusOryza nivara25.6815.0884.2176forward
CNT30726724Citrullus lanatusLupinus angustifolius47.6429.7582.27141forward

Expression of CNT3019818

Peptides detected in this lncRNA

>peptide 1 (46 aa)
KALVRTSMEIGGSDPKTALAMVITPGFWLLSPANARAGACPTFNWK*

>peptide 2 (59 aa)
MSNIQLEVNEANREHKNISFVQNFGEDLLGLEVTKPTRRVPSTTTRISVPLGWVWGGFSP

Sequence

>CNT3019818
AAGGCCTTAGTAAGAACATCAATGGAGATTGGGGGATCTGACCCAAAAACAGCATTAGCAATGGTAATAACACCTGGATTTTGGCTACTAAGTCCAGCGA
ATGCAAGAGCTGGGGCATGTCCAACATTCAATTGGAAGTGAATGAGGCCAATAGGGAACACAAAAACATCTCCTTTGTTCAAAACTTTGGTGAAGATTTG
TTGGGATTAGAAGTGACAAAGCCAACTAGAAGAGTGCCTTCCACGACCACAAGAATTTCAGTGCCTCTTGGGTGGGTGTGGGGTGGGTTTAGCCCA