CANTATAdb - search

Detailed information on CNT30197530

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-45

BLAST vs NONCODE:
NONGMAT000508, E-value = 9e-40

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375418	Pisum sativum	Arabidopsis thaliana	19.04	63.56	86.67	150	forward
CNT30616210	Pisum sativum	Sesamum indicum	36.17	22.78	83.51	285	forward
CNT3082467	Pisum sativum	Brassica juncea	36.8	40.45	78.97	290	forward
CNT30211420	Pisum sativum	Helianthus annuus	39.47	62.7	80.71	311	forward
CNT30357929	Pisum sativum	Lactuca sativa	39.59	69.64	83.01	312	forward
CNT30644824	Pisum sativum	Cannabis sativa	38.32	31.33	83.44	302	forward

Expression of CNT30197530

Peptides detected in this lncRNA

>peptide 1 (58 aa)
TVAIRVMRNLEPIILNRTVEILRKLIHTDSRRKNPVMIYKLHKSSFKQYQHPSNLIHL*

>peptide 2 (50 aa)
MSGRGKGGKGLGKGGAKRHRKVLRDNYKRKAKTNVNAKTRVLLHSSAYQR*

Sequence

>CNT30197530
CACCGTGGCGATCCGCGTGATGCGAAATCTTGAACCAATCATTTTAAATCGAACGGTGGAGATCTTGAGAAAGCTTATTCACACGGATAGCCGTCGAAAA
AACCCTGTCATGATATATAAACTCCACAAATCCTCATTCAAACAATATCAGCATCCATCAAATCTCATACATCTCTGAAAGTAAGAATCAGCTATCAACA
ACATCACCATGTCTGGAAGAGGTAAAGGTGGTAAGGGTTTGGGAAAGGGTGGTGCAAAGCGTCACCGTAAGGTTCTGAGGGATAACTATAAGAGAAAAGC
AAAAACTAATGTTAATGCTAAAACTCGGGTACTTTTACACAGTAGTGCATATCAACGTTGAGATTTGAATTACAAGAAACCCTAATTGAAATTGTATTTC
CCAAATTTCTAACCGCCAAATCCGTAAAGAGTTCTTCCCTGTCTCTTGAGAGCATAAACAACGTCCATTGCAGTAACAGTCTTCCGGCGAGCATGCTCCG
TGTAAGTAACGGCGTCACGGATAACATTCTCCAGAAAGATCTTCAAAACACCGCGAGTTTCTTCATAGATTAATCCACTGATACGCTTCACACCACCACG
CCTTGCAAGACGGCGAATCGCAGGCTTTGTTATTCCCTGAATGTTATCCCTCAGAACCTTACGGTGACGCTTTGCACCACCCTTTCCCAAACCCTTTCCA
CCTTTACCTCTTCCAGACATGGTGATGTTATTGGTAGTTGATTCTTACTTTCAGAGACGTATGAGATTTGATGGATGCTGATGTTGTT