CANTATAdb - search

Detailed information on CNT30193220

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FV65|CAPPC_FLATR, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673967	Secale cereale	Setaria viridis	28.89	46.97	90.62	256	forward
CNT30521394	Secale cereale	Setaria italica	28.89	7.09	90.62	256	forward
CNT30474298	Secale cereale	Saccharum spontaneum	31.04	35.53	88.73	275	forward
CNT30140847	Secale cereale	Lolium perenne	30.02	46.67	92.48	266	forward
CNT3016300	Secale cereale	Zea mays	25.4	36.35	89.78	225	forward
CNT30349338	Secale cereale	Eragrostis tef	26.98	28.59	79.5	239	forward
CNT30368707	Secale cereale	Sorghum bicolor	25.4	28.88	91.56	225	forward
CNT30596912	Secale cereale	Oryza meridionalis	10.38	21.96	85.87	92	forward
CNT30369646	Secale cereale	Oryza glumipatula	29.12	48.5	83.33	258	forward
CNT30148536	Secale cereale	Brachypodium distachyon	9.37	38.79	96.39	83	forward
CNT30583436	Secale cereale	Echinochloa crusgalli	28.89	28.07	87.5	256	forward
CNT30497176	Secale cereale	Digitaria exilis	29.01	25.57	89.49	257	forward
CNT30115905	Secale cereale	Oryza nivara	29.12	48.22	84.11	258	forward
CNT30557292	Secale cereale	Panicum hallii	28.78	32.69	86.67	255	forward

Expression of CNT30193220

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYGSRSRSRCFRYGSSSRTSLCPATCTARDD*

>peptide 2 (51 aa)
NKKHPLSEKNTASNLGSTLKMPLTLFFRKNNNVQCIIRIPRNSIYIEFMCR*

>peptide 3 (59 aa)
MPAAMPFMVRMSVSSSPGAYSLAALSFTSDAGWFSSANSLDSGGCAVTWKLGSLIRFSV*

Sequence

>CNT30193220
AATAAAAAACATCCTTTATCGGAAAAAAATACTGCGTCCAATTTGGGGTCAACATTGAAGATGCCCTTAACCCTCTTTTTTAGAAAAAATAATAATGTAC
AGTGCATAATACGCATTCCACGAAACAGTATATATATTGAGTTTATGTGCCGTTAGCCGCACAGAAAGTTTTCATATACACACTGCTTGCATCAGTCACG
CCTCTATACATTATTTTCACAATTTTATTTTATTTCTCCATAACAAAAAGAAGGCGCAGCCACCCGGGGGAATCGAGAAATCCAGTGGCAGCTCGTTCCT
TCAGCACTCCGCAGATTCAAGCACACAGCAAAAACCTTGGCATTTGGCAATTTGAATCTAGCCCGTGTTCTGCATGCCGGCGGCGATGCCCTTCATGGTG
AGGATGAGCGTGTCCTCCAGCCCCGGCGCGTACTCACTCGCCGCGTTGAGCTTCACCAGCGACGCCGGCTGGTTCTCGTCGGCGAACTCCTTGGACAGCG
GCGGCTGCGCCGTCACCTGGAAACTGGGGTCCCTGATCCGCTTCAGCGTGTAGGCCTGGCACACGTTCAGGGTGGTGATGTACGGGTCACGCAGCCGCAG
CCGCTGCTTCAGATACGGGTCGTCTTCAAGAACGTCTCTATGTCCAGCAACCTGCACCGCAAGAGATGATTAGAAATCGCCATGAAATTAATGTGGGGCT
AGCTAGAATGTGATTCTTCCTCACCTGGACGAGCAGCTTCTTGGTGTCCTCGAAGTTGCTCCTCAGCTGCTCCCCGAGGGGCTTGAGCTCGTCGGCGACG
AGCAGCTCGTCGTAGAGCGCGGCGATCCCGGGGTCTCCCTTGGCGAACACCATCTCCAGCAGGTCCAGCGTGACCCTGAAGAAAGG