Detailed information on CNT30192974


BLAST search results

BLAST vs Swiss-Prot:
sp|P49170|RR18_SECCE, E-value = 7e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508636Secale cerealeSolanum lycopersicum54.1236.7490.73151forward
CNT3077213Secale cerealeBrassica juncea51.9718.2892.41145forward
CNT30475732Secale cerealeSaccharum spontaneum75.2767.9690.95210forward
CNT30150159Secale cerealeBrachypodium distachyon33.337.1492.4793forward

Expression of CNT30192974

Peptides detected in this lncRNA

>peptide 1 (44 aa)
KDKIRACFIARVINRCCFKVNLFIRLDNIFPCSLINLLIKLMFL*

Sequence

>CNT30192974
AGAAAGATAAAATACGAGCCTGTTTTATAGCAAGAGTAATTAATCGTTGTTGTTTCAAGGTTAATCTATTTATTCGTCTCGATAATATTTTTCCTTGTTC
ACTAATAAATCTATTAATTAAACTCATGTTTCTATAATCAATTCGATCTCCCGGGCCAATCCGAGGACGCCTACGAAAAGGTTGTTTAGATTTACGAAAA
GGTTGCTTGAATTTACGAAAAGTTTGCTTGGATTTACGAAAGGGTTGCTCGGATTTACTAAAGGGTTGCCTCAAAGAGC