Detailed information on CNT30190468


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 1e-158

BLAST vs NONCODE:
NONZMAT001268, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Secale cerealeSetaria viridis30.358.1388.4293forward
CNT30517641Secale cerealeJuglans regia27.9250.1981.85270forward
CNT30378008Secale cerealeArabidopsis thaliana36.8139.2982.58356forward
CNT30278532Secale cerealeChenopodium quinoa57.3950.581.26555forward
CNT30728459Secale cerealeCorchorus capsularis36.456.7780.68352forward
CNT30629049Secale cerealeVigna unguiculata70.7359.7978.95684forward
CNT30709122Secale cerealeGlycine max10.8629.8384.76105forward
CNT30395817Secale cerealeTriticum turgidum79.9410097.28773forward
CNT30144554Secale cerealeMedicago truncatula36.8141.5980.9356forward
CNT30264134Secale cerealeBrassica rapa34.2338.1880.97331forward
CNT30686114Secale cerealeTriticum urartu61.8410097.66598forward
CNT30349705Secale cerealeEragrostis tef45.0962.288.3436forward
CNT30365925Secale cerealeSorghum bicolor42.1945.9590.2408forward
CNT30101562Secale cerealeOryza rufipogon38.3742.9490.57371forward
CNT30585446Secale cerealeEchinochloa crusgalli12.6240.496.72122forward
CNT30116414Secale cerealeOryza nivara18.4163.5787.08178forward
CNT30725707Secale cerealeLupinus angustifolius14.4825.4182.14140forward

Expression of CNT30190468

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRELVIWDGGRGLEVMFNIFASLGVLVLQDEVNLVC*

>peptide 2 (42 aa)
GTQKGPLNRLLQPVQPSAFPSQHQTWASMSSPRWRWLPSHHQ*

>peptide 3 (89 aa)
WNSERSSESAAAACSAICFSFSTSNLGFHVFSKMAVATFSSSVIRMLSKRMPSCIVQISIPIAAMGSKSGLSSSKYSGLGISWGFQIPL*

Sequence

>CNT30190468
CTGGAACTCAGAAAGGTCCTCTGAATCGGCTGCTGCAGCCTGTTCAGCCATCTGCTTTTCCTTCTCAACATCAAACTTGGGCTTCCATGTCTTCTCCAAG
ATGGCGGTGGCTACCTTCTCATCATCAGTGATAAGAATGTTGTCAAAAAGGATGCCGTCCTGCATTGTCCAGATCTCAATTCCAATAGCGGCAATGGGAT
CGAAGTCAGGCTTGTCAAGCTCAAAGTATTCAGGGTTGGGGATTTCTTGGGGCTTCCAGATTCCCTTGTAGGCAGGGTTCTGCTTCATTGGCCTCTTCCA
TTCACCACATCCAGGTGCCTCTTCACACTTGGGGTTGTCGATCTTCGGTGCCTCCCATTCGCCATCCTCCTCATCATCCCAGTCTTCGGGCTTAGCAGCC
TCTGGGTCATCAACTTCCTCAGGCTCATCATCCAACCATCCTTCTGGCTTGGTGGCCTCCTCATCCAGAATTTCTGTTGGGGCATCCTCATCCCAGTCAT
CGGGCTTCACTGCATCTGGATCAGGGATTTTAGCTCTCTCGTCCCAGTCCTCTGGCTTCTTGTCGTCAGGGTCAGGAATAGTCTTTGATGGAATAAGTGC
TGGCTCAAAATCGTCAGCAGACAGGAAGTTTGCTTTGCTCTTCTCCTCCCCATCAACCAAAATTCTGACCTCGTTATCAGGCTTCAAGATAGCCGTGTAG
ACATGAGAGAGCTTGTCATATGGGACGGAGGGCGGGGACTTGAGGTGATGTTCAACATATTTGCCAGTCTTGGGGTTCTTGTGCTTCAGGATGAAGTGAA
CCTTGTTTGTTGAACCACACTTGTCAGGACCAAACATAATTGTGTAAGGAGTGTCATTGTCAAATTCCTTGGCGTCCCATCCAGCCTCCTGAGGGCGAAT
GTACTTAAGATAAGCACCTCCACACTCAAGGCCATTCTGAAGCCTCACTTCAAACTGCAGGACAACT