CANTATAdb - search

Detailed information on CNT30189101

BLAST search results

BLAST vs Swiss-Prot:
sp|O82709|CALX_PEA, E-value = 2e-138

BLAST vs NONCODE:
NONZMAT001268, E-value = 8e-121

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30164689	Secale cereale	Pistacia vera	25.59	48.91	81.41	269	forward
CNT30561418	Secale cereale	Actinidia chinensis	27.02	28.17	80.28	284	forward
CNT30238817	Secale cereale	Brassica oleracea	30.35	59.85	81.5	319	forward
CNT30140632	Secale cereale	Lolium perenne	16.37	84.31	94.19	172	forward
CNT30605054	Secale cereale	Gossypium raimondii	23.41	43.39	82.52	246	forward
CNT30126269	Secale cereale	Corymbia citriodora	15.89	44.06	82.04	167	forward
CNT30120413	Secale cereale	Citrus clementina	21.22	27.56	82.96	223	forward
CNT30149228	Secale cereale	Brachypodium distachyon	27.31	60.42	87.11	287	forward

Expression of CNT30189101

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPLALVGRVILHRLLPFTTSRDFSSLIPILWLLVVRVRNSL*

>peptide 2 (88 aa)
MKDSVKIIAGDMEQNMSLTMSKKVIYFTEGMSNIMSGKRQKNELPGFQKGPLMHLLQPPQPSAFPSRHHTWASMSSPGQRWLPSHYRQ*

>peptide 3 (44 aa)
MLSNRMPSCIVQISIPIAAIGSKSGLSSSKYSGLGISWGFQIPL*

>peptide 4 (36 aa)
MRELVIWDRGWGLEVMFNVFASLRVLVLQDEVNLVC*

Sequence

>CNT30189101
TCAATGATAACACGCAAGCAGTGATACAATGAAGGATTCAGTAAAAATAATTGCTGGAGATATGGAACAAAACATGAGTTTGACAATGTCAAAAAAAGTA
ATTTACTTCACTGAAGGAATGTCAAACATAATGTCTGGAAAACGCCAGAAGAATGAATTACCTGGATTTCAGAAAGGCCCTCTGATGCACCTGCTGCAGC
CTCCTCAGCCTTCTGCTTTTCCTTCTCGACATCATACTTGGGCTTCCATGTCTTCTCCAGGACAGAGGTGGCTACCTTCTCATTATCGGCAATAAGAATG
TTGTCAAATAGGATGCCATCCTGCATTGTCCAGATCTCAATTCCAATAGCGGCAATTGGGTCAAAGTCAGGCTTGTCAAGCTCAAAGTACTCCGGGTTGG
GGATTTCTTGGGGCTTCCAGATTCCCTTGTAGTTGGGGTTGTCAATCAGGGGGGCATGCCACTTGCCCTTGTAGGCAGGGTTATCCTTCATCGGCTTCTT
CCATTCACCACATCCAGGGATTTTAGCTCTCTCATCCCAATCCTCTGGCTTCTTGTCGTCAGGGTCAGGAATAGTCTTTGATGGAATAAGTGCTGGCTCA
AAATCGTCAGCAGAAAGGAAGTTTGCTTTGCTCTTCTCCACCCCATCAACCAAAATTCTGACCTCGTTATCCGGCTTCAAGATAGCCGTGTAGACATGAG
AGAGCTTGTCATATGGGACAGAGGGTGGGGACTTGAGGTGATGTTCAACGTATTTGCCAGTCTTAGGGTTCTTGTGCTTCAGGATGAAGTGAACCTTGTT
TGTTGAACCACACTTGTCAGGACCAAACATGATTGTGTACGGAGTATCATTGTCAAAGTCCTTGGCGTTCCATCCGGTAGCCTGAGGACGGATGTACTTG
ATATAAGCACCTCCACACTCAAGGCCATTCTGAAGCCTCACTTCAAACTGCAGGACAACTGTCTCATCCTTCAAAGTAACCGGGTAATCAAGTTCTTTGA
TTATGGCATATTTCCTGGCTGGCTCGCTAACAAGGAGACCATAGTCTTCAT