CANTATAdb - search

Detailed information on CNT30187312

BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 7e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30296862	Secale cereale	Triticum aestivum	92.31	103.14	90.65	492	forward

Expression of CNT30187312

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MYIILQIWESSRYHNVRDTMIDAYLIHSQCRKENVSMHACTGDEPTTTHAYISTV*

>peptide 2 (47 aa)
MDLARAGEVGGAGLAALVEKQDEVDGDVELDAKNVGLDGGAEAHGGV*

>peptide 3 (49 aa)
MPRTLALMAVQRHTAASRLARPLRSGQHCSLAGTPRLSFSRFRTLAHAPS

Sequence

>CNT30187312
GTGATTATGATTGTGGACATATCACGGGTCTAGTTAACACAACTTGAACAAACTTTTTATTCCACGTACGTGTACAAGTATGTATATAATTTTACAAATA
TGGGAATCATCTAGATACCATAACGTGCGGGATACAATGATCGATGCCTACCTTATACATAGTCAGTGCAGGAAAGAAAATGTAAGCATGCATGCATGCA
CGGGTGACGAGCCGACGACTACGCATGCATATATAAGTACTGTATAACACAAACATGCATGGTTTGTGATATTTAGATCGATCGATGTATCCATGGATTT
AGCTAGGGCAGGTGAAGTCGGCGGGGCAGGTCTTGCCGCACTGGTTGAGAAGCAGGACGAGGTCGACGGGGACGTTGAGCTTGATGCCAAGAACGTTGGC
CTTGATGGCGGTGCAGAGGCACACGGCGGCGTCTAGGTTGGCGAGGCCGCTCAGGAGCGGGCAGCACTGCTCGCTCGCCGGCACGCCGAGGTTGAGCTTT
AGCAGGTTCAGGACGTTAGCGCACGCGCCCAGC