Detailed information on CNT30186107


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693801Secale cerealeOryza sativa25.4739.0797.25109forward
CNT30670544Secale cerealeSetaria viridis50.9374.9189.45218forward
CNT30226219Secale cerealeHordeum vulgare27.5750.43100118forward
CNT30363895Secale cerealeSorghum bicolor48.652.7987.02208forward
CNT30576366Secale cerealeOryza barthii58.4147.7187.6250forward

Expression of CNT30186107

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MIRGSSPSLGGGELGDGLGALGDGVLGELAGEDEADGGLDLPGRDGGLLEFMMDMALEEMPTSGCTCLSTLKM*

>peptide 2 (71 aa)
KWHEEKSESEATGKHTRTLIDSNSSITISFKAASSTILTEIVTPCYCQLHTRCLPPSPRHDSRIKPKPRRR*

Sequence

>CNT30186107
TAAATGGCATGAAGAAAAGTCTGAATCTGAAGCGACAGGCAAGCACACACGAACATTGATTGATTCAAACAGCAGCATCACTATTTCTTTCAAGGCCGCA
AGCAGCACAATTCTTACAGAGATTGTAACACCGTGCTACTGCCAACTACATACACGATGCCTGCCACCATCACCTCGGCATGATTCGAGGATCAAGCCCA
AGCCTAGGAGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATC
TCCCGGGACGTGATGGTGGGCTTCTTGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGACGTCGGGGTGCACCTGCTTGAGCACCTTGAAGATGTA
GATCTTGTACGTCTCCACACCCTTCTTG