CANTATAdb - search

Detailed information on CNT30184336

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30136185	Secale cereale	Lolium perenne	66.03	68.44	84.48	451	forward

Expression of CNT30184336

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MLPLCKKRLKQSTSSMFFKSQLSSFPLEASHMPASDQDPSEAYPSHPSEAYPSHPSEVDPPYQAEQARREGAIERTCS

>peptide 2 (54 aa)
MFTGGNTNTEECTPKISSLFITQAIQMVPVFHLSLFSWNLISSSSYPIIIYSNQ*

Sequence

>CNT30184336
AAAAGATACAAGTTTGCTCAGGAGAACTACTGACCATTAACAAAATACAAATACAGATATAGATACAAATACACCGTGTTTGTTCAACAAAAGCATTCTT
CCAGGTACAAAACCCAAACCTCTGAACACAAAGTGTAACATATAACATACAGGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACA
CCCAAAATATCTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGTCTTCCACCTCTCACTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACC
CCATCATAATATATAGCAACCAGTAAATTAAGTCTACCTCGGCTAGAGATATTGCTCACCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAAC
CAATAACCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCATGCTCCCTCTGTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCT
TCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATCGGACCAGGACCCATCGGAGGCATACCCATCCCACCCATCGGAGGCATA
CCCATCCCACCCATCGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGCGTACATGTTCTG