« Back to Secale cereale search


Detailed information on CNT30184081


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223895Secale cerealeHordeum vulgare31.3730.6492.8250forward
CNT30555549Secale cerealeOryza glaberrima29.3613.1682.05234forward
CNT30104106Secale cerealeOryza rufipogon29.1111.6882.33232forward

Expression of CNT30184081

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MYIFGSVDLFHAEGPIKLSLGLLSLKREGASFPVFRRMHDLGL*

>peptide 2 (44 aa)
RTLLDLIRASRPAAPRRPESSLPSAAPPPGSPKGLREGGARRLG*

>peptide 3 (89 aa)
PEHYLILSERAVQRRRGGRSLLSHRPRRHRGPPRACGKVARDVWVESRGIRSCCRRRAMTTARGRSARDDGRAGSPNKQKISITFLLSF*

Sequence

>CNT30184081
CCCGAACACTACTTGATCTTATCCGAGCGAGCCGTCCAGCGGCGCCGCGGCGGCCGGAGTCTTCTCTCCCATCGGCCGCGCCGCCACCGGGGTCCCCCAA
GGGCTTGCGGGAAGGTGGCGCGCGACGTTTGGGTTGAGAGTCGCGGCATCCGCAGCTGCTGCCGGCGGCGAGCGATGACGACTGCCCGCGGTCGGAGCGC
GCGCGATGATGGCCGCGCGGGCTCACCCAACAAACAAAAAATCTCCATTACTTTCTTGCTTTCTTTTTAGGGTTTTCATCTTCTTTTTTTGATCGATTTT
TTTTTTGTTCGTTTTTCTTGTGCTTGCTATTTGTATTCCTCAGCAAATTGTTATCCGTTTCTTGGGTTTTAACCAAGTTTCTTCTCGCAAGATGTATATT
TTTGGTTCAGTGGATCTTTTTCATGCGGAAGGGCCTATCAAGTTGAGCCTTGGATTGCTCTCTTTGAAGCGGGAAGGTGCTAGTTTTCCTGTTTTTAGAC
GAATGCATGACCTGGGCCTGTGATATGTTTTTTTAAAGGGAGCCTGTGACTTTGTAATAGTATAGTTTATTTATATAAGGTGTCTAGATTTCTTTAGGAG
CTGCGCGCTGTAAATCTTTCTCGGATTGGTTGATGGCTACCATGCATTCAGTCTGTTTGTGGAGGATCCTGTTGTAATATTGTTAATTGTATTTGTATAT
TACAAAGATCCAATGAAATGCTGCCTGTTGTATACTTGCATCTCAGCTTAATACTATGAAATTGGAGTATATAATTGTCGGGATTGCTAAATTTCAG