CANTATAdb - search

Detailed information on CNT30180521

BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30117253	Secale cereale	Oryza nivara	29.83	28.92	88.89	216	forward

Expression of CNT30180521

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTFEEPYSFIYLPFYFTVCTSVSRTDSSSPCPRHAKCQKRSLYLIMYVGLIAVLHAFA*

>peptide 2 (40 aa)
MPTSCQMSKEKFISHYVCRIDSSSPCLCMRKWESDRYIYM*

>peptide 3 (43 aa)
KSDTFLHARCLSAPCQNSWVNDIRGAVLFHLLAILLHCVYKCK*

>peptide 4 (50 aa)
MFPILIMAVVKALLKAAALDAKLRTVLSVVSLLKSTWSECRSPFCDRRLV*

Sequence

>CNT30180521
AAAAATCTGATACTTTTTTGCATGCAAGATGCTTGAGTGCGCCGTGCCAAAATTCATGGGTAAATGACATTCGAGGAGCCGTACTCTTTCATCTACTTGC
CATTTTACTTCACTGTGTGTACAAGTGTAAGTAGGACTGATAGTAGTTCTCCATGCCCACGTCATGCCAAATGTCAAAAGAGAAGTTTATATCTCATTAT
GTATGTAGGATTGATAGCAGTTCTCCATGCCTTTGCATGAGAAAGTGGGAATCCGATCGTTACATATATATGTAGACGCATGCATGATTTGATGCTGCTC
GTACATAAAATACACGTTTCCAAGTGCTGGTATTTATATTGACCACTGTTCTGTGGCCTTATTCATTCACGTGTCGTGCTTGCGAACGCTGCCGACAGCT
AGTAGGTAGTAGCTCGTCCGTCCATCACGAGTTCACCTTGGAGCAGCTGAGCCTGATCTGCCCCTGCGTCCCGGTGAGCGGCGCGATGTTTCCCATCTTG
ATCATGGCCGTGGTGAAGGCGCTGCTGAAGGCCGCCGCGTTGGATGCAAAGTTGCGGACGGTGTTGTCAGTGGTGTCGTTGTTGAAGAGCACCTGGTCCG
AGTGCAGGAGCCCCTTCTGTGACAGGAGGTTGGTGTAGTAGGCGTTGTCGAACGCGTTGGGCGTCGTGGTGTCCAGGTTCGCCAGGCTGCTGTCGCCGCC
GGACTGGGGGCAGTTGGCCTTGAG