Detailed information on CNT30180126


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Secale cerealeOryza sativa20.0311.9892.44119forward
CNT30596630Secale cerealeOryza meridionalis45.4535.1687.41270forward
CNT30370682Secale cerealeOryza glumipatula45.6233.5489.67271forward
CNT30102748Secale cerealeOryza rufipogon45.4535.2984.44270forward
CNT30577207Secale cerealeOryza barthii45.6231.0189.3271forward

Expression of CNT30180126

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RTDSSSPCPRHAKCQKRSLYLIMYVGLIAVLHAFA*

>peptide 2 (40 aa)
MPTSCQMSKEKFISHYVCRIDSSSPCLCMRKWESDRYIYM*

>peptide 3 (50 aa)
MFPILIMAVVKALLKAAALDAKLRTVLSVVSLLKSTWSECRSPFCDRRLV*

Sequence

>CNT30180126
GTAGGACTGATAGTAGTTCTCCATGCCCACGTCATGCCAAATGTCAAAAGAGAAGTTTATATCTCATTATGTATGTAGGATTGATAGCAGTTCTCCATGC
CTTTGCATGAGAAAGTGGGAATCCGATCGTTACATATATATGTAGACGCATGCATGATTTGATGCTGCTCGTACATAAAATACACGTTTCCAAGTGCTGG
TATTTATATTGACCACTGTTCTGTGGCCTTATTCATTCACGTGTCGTGCTTGCGAACGCTGCCGACAGCTAGTAGGTAGTAGCTCGTCCGTCCATCACGA
GTTCACCTTGGAGCAGCTGAGCCTGATCTGCCCCTGCGTCCCGGTGAGCGGCGCGATGTTTCCCATCTTGATCATGGCCGTGGTGAAGGCGCTGCTGAAG
GCCGCCGCGTTGGATGCAAAGTTGCGGACGGTGTTGTCAGTGGTGTCGTTGTTGAAGAGCACCTGGTCCGAGTGCAGGAGCCCCTTCTGTGACAGGAGGT
TGGTGTAGTAGGCGTTGTCGAACGCGTTGGGCGTCGCCGTGTCCAGCGGCGCCAGGCTGCTGTCGCCGCCGGACTGGGGGCAGTTGGCCTTGAG