Detailed information on CNT30180112


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 3e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221499Secale cerealeHordeum vulgare28.195.8893.19279forward
CNT30387601Secale cerealeTriticum turgidum34.1440.8996.46339forward
CNT30680601Secale cerealeTriticum urartu32.5392.8295.05323forward
CNT30348947Secale cerealeEragrostis tef15.7134.5983.33156forward

Expression of CNT30180112

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLPILIMAVVKALLNAAGLDAKFRTVLSVVSLLNSTWSECRSPFCDMRLV*

>peptide 2 (58 aa)
MTFEEPYSFIYLPFYFTVCTSVSRTDSSSPCPRHAKCQKRSLYLIMYVGLIAVLHAFA*

>peptide 3 (40 aa)
MPTSCQMSKEKFISHYVCRIDSSSPCLCMRKWESDRYIYM*

>peptide 4 (43 aa)
KSDTFLHARCLSAPCQNSWVNDIRGAVLFHLLAILLHCVYKCK*

>peptide 5 (62 aa)
MVCAPESATMSTVLRFFLRNAASSCDRLEPGPGRSLLASAALAVVESRLPSGTVHDGPPSCMQ

Sequence

>CNT30180112
AAAAATCTGATACTTTTTTGCATGCAAGATGCTTGAGTGCGCCGTGCCAAAATTCATGGGTAAATGACATTCGAGGAGCCGTACTCTTTCATCTACTTGC
CATTTTACTTCACTGTGTGTACAAGTGTAAGTAGGACTGATAGTAGTTCTCCATGCCCACGTCATGCCAAATGTCAAAAGAGAAGTTTATATCTCATTAT
GTATGTAGGATTGATAGCAGTTCTCCATGCCTTTGCATGAGAAAGTGGGAATCCGATCGTTACATATATATGTAGACGCATGCATGATTTGATGCTGCTC
GTACATAAAATACACGTTTCCAAGTGCTGGTATTTATATTGACCACTGTTCTGTGGCCTTATTCATTCACGTGTCGTGCTTGCGAACGCTGCCGACAGCT
AGTAGGTAGTAGCTCGTCCGTCAATCACGAGTTCACCCTGGAGCAGCTGAGCCTGATCTGGCCCTGCGTCCCCGTCTTGGGCGCGATGTTGCCCATCTTG
ATCATGGCCGTCGTGAAGGCGCTGCTGAACGCGGCCGGGTTGGACGCAAAGTTCCGGACGGTGTTGTCGGTGGTGTCGTTGTTGAACAGCACCTGGTCCG
AGTGCAGGAGCCCCTTCTGTGACATGAGGTTGGTGTAGTAGGCGTTGTCGAACGCGTTGGGCGTCGTGGTGTCCAGGTTCGCCAGGTTGCCGTTTCCGCC
GGACTGGGGGCAGTTGGCCTTGAGAGACGTCGCGAAGGCGGTGTTGATGTTGGTGTCACCGCCGTAGATCCGAGTCCGGAAGTTGGAGCACTGGGCCTTC
CCGATGGTGTGCGCGCCTGAGAGCGCGACCATGTCGACCGTGTTAAGGTTCTTCTTGAGGAACGCGGCCTCGAGCTGTGACCGGCTGGAGCCGGGGCCAG
GGAGGTCGCTGTTGGCCAGCGCCGCGCTTGCGGTGGTGGAGTCCCGTCTACCGAGTGGAACAGTCCATGACGGCCCTCCAAGCTGCATGCAGA