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Detailed information on CNT30179972

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696585	Secale cereale	Oryza sativa	28.14	68.21	84.95	206	forward
CNT30309159	Secale cereale	Triticum aestivum	51.23	65.67	90.13	375	forward
CNT30555228	Secale cereale	Oryza glaberrima	25.14	27.26	80.98	184	forward
CNT30437233	Secale cereale	Aegilops tauschii	54.78	53.04	88.78	401	forward
CNT30252009	Secale cereale	Avena sativa	54.37	40.12	82.66	398	forward
CNT30659789	Secale cereale	Triticum dicoccoides	50.68	37.51	88.95	371	forward
CNT30132649	Secale cereale	Lolium perenne	50.27	24.39	85.6	368	forward
CNT30109239	Secale cereale	Oryza longistaminata	27.73	37.45	84.24	203	forward
CNT30149781	Secale cereale	Brachypodium distachyon	11.34	21.23	90.36	83	forward
CNT30103605	Secale cereale	Oryza rufipogon	27.32	29.59	83	200	forward
CNT30577809	Secale cereale	Oryza barthii	27.73	24.28	81.77	203	forward
CNT30117627	Secale cereale	Oryza nivara	28.01	31.2	82.93	205	forward
CNT30551656	Secale cereale	Oryza brachyantha	25.68	22.04	85.11	188	forward

Expression of CNT30179972

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPPRSSWRRRRRRRLCPRTPARSWMAPGRRTAHWRRHCGAGRRSRSRGGQLPGAR*

>peptide 2 (87 aa)
MMCFLIGPHRVADAHSGDATAFVLAPATTPKVVPSDTGTILDGSWPAHGALEAALWSWATQSEPWRSAARGTLKAPVPSRAPMALLS*

Sequence

>CNT30179972
TTGCTTTAATTTGGATTTGATTGTATTACTCAGTCTATAATAATTTTTGTTTACAAAATCACACTGATATTACAAACACCGGTAAAGAAATACCTATCAC
CCGTACAATTGAGTGACACACACTGATCCATCTGCTCCCCTCATAACTCTTATTGTGAACTCTTCCGCAGATACTGAAGAAAACCAAACCAACCACGCAT
GCGATGCGATAATCATAAATAGCGGTCACTCACTCATCGACACAGCACGATAACCAGGCGATTTCAGTGCTGGGCGGCTGGGTGGCAGATCGGAGTCAGT
GGTGTCCGTGGTATCCGCCGCCGCCGCCGCCGTAGGTGGGCGTGGGAGGGACGGGGTGGTAGTCCGGGTGGGGCTGCGGCTTGGGCTCCGGCTTGGGCGG
CACGGGCTTCTTGTGGTGGAAGTGCTCGATGATGTGCTTCTTGATCGGCCCGCACAGGGTCGCGGACGCGCACTCTGGGGATGCCACCGCGTTCGTCTTG
GCGCCGGCGACGACGCCGAAGGTTGTGCCCTCGGACACCGGCACGATCTTGGATGGCTCCTGGCCGGCGCACGGCGCATTGGAGGCGGCACTGTGGAGCT
GGGCGACGCAGTCGGAGCCGTGGAGGTCAGCTGCCAGGGGCACGCTGAAGGCGCCGGTGCCGTCGAGGGCACCCATGGCCTTGCTCTCGTAGTCGCCGTC
GATGTTCTTGCACTTGATCGCCACCTGGAGCC