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Detailed information on CNT30179895


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Secale cerealeOryza sativa46.9915.7890.4125forward
CNT30671430Secale cerealeSetaria viridis22.9324.2193.4461forward
CNT30520717Secale cerealeSetaria italica63.1623.0188.1168forward
CNT30290295Secale cerealeTriticum aestivum63.1625.8999.4168forward
CNT30385644Secale cerealeTriticum turgidum67.2922.9298.32179forward
CNT30562240Secale cerealeActinidia chinensis38.355.683.33102forward
CNT30554363Secale cerealeOryza glaberrima54.14688.89144forward
CNT30659718Secale cerealeTriticum dicoccoides67.2926.3298.88179forward
CNT30453977Secale cerealeSaccharum spontaneum63.1656.7685.71168forward
CNT303454Secale cerealeZea mays90.2394.4985.42240forward
CNT30680164Secale cerealeTriticum urartu67.2927.598.32179forward
CNT30351417Secale cerealeEragrostis tef71.4388.3788.95190forward
CNT30362913Secale cerealeSorghum bicolor95.1190.3684.98253forward
CNT30370617Secale cerealeOryza glumipatula54.1452.3688.89144forward
CNT30148624Secale cerealeBrachypodium distachyon65.0441.1993.64173forward
CNT30581445Secale cerealeEchinochloa crusgalli63.1624.2888.69168forward
CNT30496557Secale cerealeDigitaria exilis63.1671.4988.1168forward
CNT30117138Secale cerealeOryza nivara46.9910.3990.4125forward

Expression of CNT30179895

Peptides detected in this lncRNA

>peptide 1 (87 aa)
PVEGGEELAGEVLEVLLLLLGGLGGDDGLEVVHDIRPLLLVDERLEVEDVLGRLLGPDRRLRRWQRLQVEPVLQGQVEVPCLVGVVRS

>peptide 2 (68 aa)
PSRVAKSLPVRSLRSFFSSLVVLEEMTVLRSFMTYGHCFLSMSGLRLRMSWADSLARTAASAGGSGCR*

Sequence

>CNT30179895
CCCGTCGAGGGTGGCGAAGAGCTTGCCGGTGAGGTCCTTGAGGTCCTTCTTCTCCTCCTTGGTGGTCTTGGAGGAGATGACGGTCTTGAGGTCGTTCATG
ACATACGGCCATTGCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGGGCCGACTCCTTGGCCCGGACCGCCGCCTCCGCCGGTGGCAGCGGCT
GCAGGTAGAACCGGTTCTTCAGGGGCAGGTCGAAGTCCCTTGCCTCGTCGGAGTTGTCCGTTCCGG