Detailed information on CNT30179783


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 8e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289913Secale cerealeTriticum aestivum31.2241.8384.67261forward
CNT30221586Secale cerealeHordeum vulgare12.3250.4994.17103forward
CNT30387837Secale cerealeTriticum turgidum16.1550.9489.63135forward
CNT30553544Secale cerealeOryza glaberrima24.6429.1883.01206forward
CNT30253294Secale cerealeAvena sativa10.7735.1683.3390forward
CNT30596085Secale cerealeOryza meridionalis30.2615.8584.19253forward
CNT30101479Secale cerealeOryza rufipogon29.923.9583.2250forward

Expression of CNT30179783

Peptides detected in this lncRNA

>peptide 1 (43 aa)
DRHTVRNTDSERWNTVCGRPKLSGYAVLTIITVCDTDSFSFLC*

>peptide 2 (88 aa)
MSAAIPSSPATAVSMSWTRLFGAAQLFRISPLLPVSRSMLLILVMDLANCSKKAPWLSEKRVAMRLVAGWSMRPWSDLNRPCLAIRSK*

>peptide 3 (31 aa)
MAGLVSNTGLKRSSKAGQWATPKVCAPERATR

Sequence

>CNT30179783
TGACCGTCACACAGTACGTAACACTGACAGCGAGAGATGGAACACCGTTTGTGGGCGGCCTAAATTATCCGGTTATGCCGTCTTGACCATCATAACAGTA
TGTGACACTGACAGCTTCTCTTTTTTGTGTTGACGGTAACACTGAGAGTGACACGCTACTTTGCGTTTCTAGTTGGTCTTAAAGCTGACCCAGTTAGACA
TTACGATGTTACAGGTGATCACACATAGTACACACTGAGATGCAAATGATTTTACTTCTCATCTTATTAACTAAGACAGCACGGTTGCACAATTAAAAGT
TTAAAAAACACAAACTTAACAGTCACTCACACTACGTTTACATCGATAGAACATCTCTCACATGTCGGCGGCGATCCCCTCGTCGCCGGCGACGGCGGTA
TCGATGTCCTGGACACGCCTGTTTGGGGCGGCGCAGTTGTTCCGTATCTCGCCCTTGTTGCCGGTGAGCAGGTCCATGTTGCTCATCTTGGTCATGGACC
TGGCGAACTGCTCGAAGAAGGCGCCCTGGTTGAGCGAGAAGCGGGTGGCCATGCGCTTGGTGGCCGGGTGGTCGATGAGGCCCTGGTCCGACTTGAACAG
GCCCTGCCTGGCGATCAGGTCGAAGTAGTACTTGTTGTCGAAGGCGTCCGGGGTGCGCACGTCGAGGTTCTGCGTGAGGGTGCCGGCGGGGTTGTCCCCG
GCGCACTTGTTCCGGAGAGAGGTGGCGAACTTGGAGTCGATGGCCGGGTTGGTGTCGAACACCGGCTTGAAGCGGTCCTCGAAGGCCGGGCAGTGGGCGA
CGCCGAAGGTGTGCGCGCCGGAGAGGGCCACCAGGT